Pairwise Alignments

Query, 403 a.a., Type II secretion pathway protein XcpS from Pseudomonas putida KT2440

Subject, 400 a.a., assembly protein in type IV pilin biogenesis, transmembrane protein from Escherichia coli BL21

 Score =  140 bits (352), Expect = 9e-38
 Identities = 101/351 (28%), Positives = 167/351 (47%), Gaps = 4/351 (1%)

Query: 53  ALRGMAWRREAAFDLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLY 112
           A+    WR + + +++    +L+TLL AGL L + L  LAE+ P+   + +L  L   L 
Sbjct: 49  AINSAQWRGDKSAEVI---HQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLE 105

Query: 113 EGRSLSQALGQQPRVFPPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVY 172
           +G + S AL     VFPPLY A++++ E TG L +        ++    +  K+  A  Y
Sbjct: 106 QGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRY 165

Query: 173 PLLLLLVGGGVVLFLLGYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTV 232
           P+++L +   VV+ +L +V+P F+ +++   T LP L++ +M +  F       L L   
Sbjct: 166 PIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGF 225

Query: 233 GGVAALWLLRRHPRVRYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMG 292
               A  LL R P         L R+P +   +   +L + +  L +    GI  L  + 
Sbjct: 226 LLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVE 285

Query: 293 MARGLLGNAA-AQGLEQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLE 351
             R  +      Q L Q    +  G P+  AL      +P+ L+L+R GE SG+L  ML+
Sbjct: 286 SVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLD 345

Query: 352 RCADFHDQEIGRWVEWFVKLFEPLLMTFIGLLIGLIVILMYMPIFELASSI 402
             A  H +      +    L EP L+   G +IG +V+ MY+PIF L  ++
Sbjct: 346 NLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAM 396