Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  281 bits (719), Expect = 3e-80
 Identities = 180/482 (37%), Positives = 257/482 (53%), Gaps = 31/482 (6%)

Query: 4   SILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHD 63
           SILV +DD  +   +   LS  GYEV  C +A      + +   D V+TD  +P  +  D
Sbjct: 5   SILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDENAFD 64

Query: 64  LLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERM 123
           LL  +    PDL VI+M+       A++A + GA+ YL KP  L EL   + +ALA  + 
Sbjct: 65  LLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALAEPK- 123

Query: 124 ERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGT 183
            +    +   E Q +    L+G SP M  +   L +++  +          V+I GE+GT
Sbjct: 124 -KGDGHHHAPEEQDN--IPLVGRSPAMQEIYRLLARLMQTDLT--------VMIAGESGT 172

Query: 184 GKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAAD 243
           GKELVARALH  G R  GPF+  N A+IP +L+E+ELFGHEKG+FT A  R  G  E A+
Sbjct: 173 GKELVARALHDYGKRRTGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNPGRFEQAE 232

Query: 244 GGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGK 303
           GGTLFLDEIG+M +  Q +LL++L+      +G     K D+R+I+ATN +L  ++QQG 
Sbjct: 233 GGTLFLDEIGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGL 292

Query: 304 FRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYS 363
           FR DLFFRL ++ L++P L  R +D+  L RHF    + R G P  +  + A   L  Y 
Sbjct: 293 FREDLFFRLNVVPLRLPPLRERSEDVPDLVRHFFL-QAEREGLPAKQIDSAALDRLKRYR 351

Query: 364 WPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMT------LVDEPLAQQPMAAMFE---- 413
           WPGNVREL N++ +   L P EV+    +   ++      L +E      +AA  E    
Sbjct: 352 WPGNVRELENLVRRLAALYPQEVITPAIIEAELSEPMPNMLSEEGPVDATLAASVERHLN 411

Query: 414 -----MPRHEPEPG---TSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKL 465
                   + P PG     L D+E  L+   L  T  N  K+A +LGL+R+ LR +I  L
Sbjct: 412 TYFSGFGENLPPPGLYHRILKDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIRDL 471

Query: 466 GL 467
            +
Sbjct: 472 DI 473