Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  305 bits (780), Expect = 3e-87
 Identities = 187/477 (39%), Positives = 271/477 (56%), Gaps = 26/477 (5%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           IL+VED+ I+   +R  L    Y+V    S + A E+      D +++D  LPG  G +L
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124
           ++          V++MT Y ++  AV +MK GA  Y+ KP    E+   + + L   +  
Sbjct: 64  IKL----GQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSP 119

Query: 125 RTLSFYQE---REAQKSGLQ------ALIGESPVMLTLKHTLRQVLDAERRMASDDLPPV 175
            +    Q    + A K G+        +IG  P M  L   +R+V   +          V
Sbjct: 120 SSAPAEQRPAGKAADKPGVDNSNGEIGIIGSCPPMQDLYGKIRKVAPTDSN--------V 171

Query: 176 LIEGETGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERR 235
           LI+GE+GTGKELVARALH    R+K P I  NCA+IP +L+E+ELFGHEKGAFT A   R
Sbjct: 172 LIQGESGTGKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGR 231

Query: 236 VGLVEAADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNL 295
            GLVEAADGGTLFLDEIGE+ L  QA+LL++L++  IRR+G+V+ +KVD+R+I+AT+ +L
Sbjct: 232 AGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDL 291

Query: 296 EQMVQQGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEA 355
           + + + G+FR DL++RL +IALK+P L  RG D+  +A  FL   S R  + +L+F+ +A
Sbjct: 292 KSLAKIGQFREDLYYRLHVIALKLPALRERGADVNEIAHAFLLRQSARINRTDLKFAPDA 351

Query: 356 ESLLLGYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNL---CMTLVDEPLAQQPMAAMF 412
           E  +  YSWPGNVREL N +E+ V+L+ +  + A  L +      L D+       +   
Sbjct: 352 EQAIRHYSWPGNVRELENAVERAVILSESPEISAELLGIDIELSDLEDDDFIGLAPSQGG 411

Query: 413 EMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLTR 469
               HEP    SL D  +  V +  D      T+ AR LG+SR  L  R ++LG+ R
Sbjct: 412 SNTSHEPTEDLSLEDYFQHFVLEHQDH--MTETELARKLGVSRKCLWERRQRLGIPR 466