Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

 Score =  271 bits (694), Expect = 3e-77
 Identities = 174/479 (36%), Positives = 260/479 (54%), Gaps = 34/479 (7%)

Query: 4   SILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHD 63
           ++ +V+DD  +   +   L  +G       SA+  + ++ R QPD +++D  +PG SG D
Sbjct: 6   TVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLD 65

Query: 64  LLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERM 123
           LL  +  Q P L VI+MT + +++ AV + + GAF YL KP         +D+A+A   +
Sbjct: 66  LLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKP-------FDVDEAVAL--V 116

Query: 124 ERTLSFYQEREAQKSG-----LQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIE 178
           +R     QE++ Q++         +IGE+P M       ++V  A  R++  ++  VLI 
Sbjct: 117 KRANQHAQEQQNQEAPPALTRTPEIIGEAPAM-------QEVFRAIGRLSHSNIT-VLIN 168

Query: 179 GETGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGL 238
           GE+GTGKELVA ALH    R+  PFI  N A+IP +L+E+ELFGHEKGAFT A   R G 
Sbjct: 169 GESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGR 228

Query: 239 VEAADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQM 298
            E ADGGTLFLDEIG+M    Q +LL++L D    R+G     KVD+R+I+AT+ NLE +
Sbjct: 229 FEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETL 288

Query: 299 VQQGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESL 358
           V  GKFR DLF RL +I + +PR+  R +DI  LARHFL+  ++          +E E  
Sbjct: 289 VHAGKFREDLFHRLNVIRIHIPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEY 348

Query: 359 LLGYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHE 418
           L    WPGNVR+L N      ++A     + H  +L   L+  P    P+    +  R  
Sbjct: 349 LKNLPWPGNVRQLENTCRWITVMASGR--EVHISDLPPELLSLPQDSAPVTNWEQALRQW 406

Query: 419 PEPG----------TSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGL 467
            +            +++P  ER ++   L  T      +A +LG  R+ L  +I++LG+
Sbjct: 407 ADQALARGQSNLLDSAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGM 465