Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  311 bits (796), Expect = 4e-89
 Identities = 178/467 (38%), Positives = 273/467 (58%), Gaps = 9/467 (1%)

Query: 1   MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60
           M H+ILVV+D+  L D + + L     +V +  +   AL+ +++   D V++D  +PGM 
Sbjct: 1   MTHNILVVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMD 60

Query: 61  GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALAT 120
           G  LL  +  + P + VI+MT Y  V++AVQ+M+ GA+ Y+ KP  + EL +T+ KAL  
Sbjct: 61  GPALLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 120

Query: 121 ERMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGE 180
             + R  +  +    + +   +L+G+SP        + Q +D+ R    D    +L+ GE
Sbjct: 121 RDIMRDNARLRAELDEHAQFDSLVGDSPAF----RKVLQAVDSVR----DSSATILLTGE 172

Query: 181 TGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVE 240
           +GTGKE+VARA+H  GSR+  PF+  NCA+IP  LLE+E+FGH KGAFT A   RVG  +
Sbjct: 173 SGTGKEMVARAIHKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQ 232

Query: 241 AADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQ 300
            AD GTLFLDE+G+M L LQAK+L+ L++R I  +G  +ERKVD+RVI+ATN NL   V 
Sbjct: 233 QADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVA 292

Query: 301 QGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLL 360
             +FR DL++RL +  + +P L  R +DI  LARHF    S   GK    FSAEA   + 
Sbjct: 293 NKEFREDLYYRLNVFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMA 352

Query: 361 GYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPE 420
            Y WPGN+REL+N +E+  ++A + V++   L   +    +P      A + + P    +
Sbjct: 353 AYHWPGNIRELQNCVERATIVAASPVIEDIDLPGYL-FASKPNQGDVTAILSDGPGIPQD 411

Query: 421 PGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGL 467
              +L ++E+  +   L  ++     +A  +G+S     YR++KLG+
Sbjct: 412 LDAALAEVEKAYILAALQESNGVQAAAAAKIGISERSFWYRLKKLGI 458