Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 480 a.a., Nitrogen regulation protein NR(I) from Pseudomonas putida KT2440

 Score =  311 bits (796), Expect = 4e-89
 Identities = 193/477 (40%), Positives = 277/477 (58%), Gaps = 20/477 (4%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           IL+VED+ I+   +R  L    Y+V    S + A E+   A  D +++D  LPG  G +L
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIATFDLIVSDLRLPGAPGTEL 63

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKAL------ 118
           ++          V++MT Y ++  AV +MK GA  Y+ KP    E+   + + L      
Sbjct: 64  IKL----GQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQNA 119

Query: 119 --ATERMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVL 176
             A    E   S  +   + K       GE  ++ + +  ++ +    R++A  D   VL
Sbjct: 120 PAAAPPAEPRASNGKATASDKGSAATANGEIGIIGSCQ-PMQDMYSKIRKVAPTD-SNVL 177

Query: 177 IEGETGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRV 236
           I+GE+GTGKELVARALH    R+K P I  NCA+IP  L+E+ELFGHEKGAFT A   R 
Sbjct: 178 IQGESGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRA 237

Query: 237 GLVEAADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLE 296
           GLVEAADGGTLFLDEIGE+ L  QA+LL++L++  IRR+G+V+ +KVD+R+I+AT+ +L+
Sbjct: 238 GLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLK 297

Query: 297 QMVQQGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAE 356
            + + G+FR DL++RL +IALK+P L  RG D+  +A  FLA  S R G+ +L FSAEAE
Sbjct: 298 NLAKAGQFREDLYYRLHVIALKLPALRERGSDVNEIANVFLARQSARIGRDDLHFSAEAE 357

Query: 357 SLLLGYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTL----VDEPLAQQPMAAMF 412
             +  YSWPGNVREL N +E+ V+L+ +  + A  L + + L     D+ L    + A  
Sbjct: 358 QAIRHYSWPGNVRELENAVERAVILSESAEISAELLGIDIELSDLDEDDILDNALVVANA 417

Query: 413 EMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLTR 469
               HEP    SL D  +  V +  D      T+ AR LG+SR  L  R ++LG+ R
Sbjct: 418 GNASHEPTEDLSLEDYFQHFVLEHQDH--MTETELARKLGVSRKCLWERRQRLGIPR 472