Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 441 a.a., sigma-54-dependent response regulator transcription factor ZraR from Escherichia coli ECRC62

 Score =  307 bits (787), Expect = 4e-88
 Identities = 179/460 (38%), Positives = 271/460 (58%), Gaps = 26/460 (5%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           ILVV+DD      ++  L   GY V + +S   ALEQ++    D VL D  +  M G   
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124
           L+ + A  P + V++MT Y +VE AV+A+K GA  YL KP+    L+ TL+KALA     
Sbjct: 68  LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA----- 122

Query: 125 RTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGTG 184
            T S   E  A  +    ++G+SP M  L   +  V  +E          VLI G++GTG
Sbjct: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEAT--------VLIHGDSGTG 174

Query: 185 KELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAADG 244
           KELVARA+H   +RS+ P +  NCA++  +LLE+ELFGHEKGAFT A +RR G    ADG
Sbjct: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234

Query: 245 GTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGKF 304
           GTLFLDEIG++  ++Q +LL+ +++R ++R+G+ +   VD+R+I+AT+ +L   V  G+F
Sbjct: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRF 294

Query: 305 RRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYSW 364
           R+DL++RL ++A++VP L  R +DI LL  HFL   + R  K    F+ +A  LL+ Y W
Sbjct: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLVGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354

Query: 365 PGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPEPGTS 424
           PGN+REL N +E+ V+L   E +   +L L +     PL Q            + +P   
Sbjct: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS----------QDIQP--- 401

Query: 425 LPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEK 464
           L ++E++++   L++T  N T++AR LG++R  L  ++ +
Sbjct: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441