Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 469 a.a., nitrogen regulation protein NR(I) from Escherichia coli ECRC62

 Score =  284 bits (726), Expect = 5e-81
 Identities = 187/481 (38%), Positives = 266/481 (55%), Gaps = 36/481 (7%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           + VV+DD  +   +   L+  G       +    LE +    PD +L+D  +PGM G  L
Sbjct: 6   VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124
           L+ +  + P L VI+MT + +++ AV A ++GAF YL KP         +D+A+A   +E
Sbjct: 66  LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKP-------FDIDEAVAL--VE 116

Query: 125 RTLSFYQEREAQKSGLQA------LIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIE 178
           R +S YQE++ Q   +Q       +IGE+P M       + V     R++   +  VLI 
Sbjct: 117 RAISHYQEQQ-QPRNIQLNGPTTDIIGEAPAM-------QDVFRIIGRLSRSSIS-VLIN 167

Query: 179 GETGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGL 238
           GE+GTGKELVA ALH    R+K PFI  N A+IP +L+E+ELFGHEKGAFT A   R G 
Sbjct: 168 GESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGR 227

Query: 239 VEAADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQM 298
            E ADGGTLFLDEIG+M L +Q +LL++L D    R+G     KVD+R+I+AT+ NLEQ 
Sbjct: 228 FEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQR 287

Query: 299 VQQGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESL 358
           VQ+GKFR DLF RL +I + +P L  R +DI  LARHFL   +R  G        E E+ 
Sbjct: 288 VQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347

Query: 359 LLGYSWPGNVRELRNMLEQTVLLAPNEVVQAHQL--NLCMTLVDEPLAQ-QP-------- 407
           L   +WPGNVR+L N      ++A  + V    L   L  + V E  +Q QP        
Sbjct: 348 LTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLA 407

Query: 408 -MAAMFEMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLG 466
             A       H+     + P++ER L+   L  T  +  ++AR+LG  R+ L  ++++LG
Sbjct: 408 QWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELG 467

Query: 467 L 467
           +
Sbjct: 468 M 468