Pairwise Alignments

Query, 426 a.a., putative Porin from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  317 bits (812), Expect = 5e-91
 Identities = 178/420 (42%), Positives = 245/420 (58%), Gaps = 21/420 (5%)

Query: 15  LYCACQTAQAA-FIHDGSGSLELRNFYFDRDFH----GDSATQSRRGEWAQGFMLRLQSG 69
           L CA   AQAA F+ D S  +E RN YF+RDF       S   S+R EWAQGF+L +QSG
Sbjct: 22  LLCAGVNAQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSG 81

Query: 70  YTDGVVGFGLDAAGMLGLKLDSSPDRSGSGLLPR-GSD-KRAADDYAKAVATFKARLAQS 127
           YT G VG G+DA GM G KLDSSP  S SGLLP  G D +R+AD YAK     K +++ +
Sbjct: 82  YTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKVKVSNT 141

Query: 128 ELKAGGLSPQLPLLASNSSRLFPQWFNGVQLVSKDLDRFTFTLLQVDATKLRDSTDYEDL 187
            LK G + P +PLL  N  RL P  F+G  L S++L    FTL ++D    RDSTD +D+
Sbjct: 142 VLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDI 201

Query: 188 TAMAQQGAYSATVTSDRLRYAGVDYQPLNNLTLSLHTSVLEDLFRRDFAGFKFKTRLGPG 247
               +   Y+    +D    AGVDY+     +     + LE+++R+ F G      L  G
Sbjct: 202 RVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPLPVG 261

Query: 248 DVFTEWRWFNAREQGRALLGGVDNQTLSTNFGYSVQGHTFSGGYQKVRGDTAYAYVGGTD 307
            +  + R   + + G A  G +D++  S   GYS+ GH  S G+Q++ G++A  Y+ G++
Sbjct: 262 SLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYLDGSN 321

Query: 308 TYLFSEQQVSTFALANERAWMLRYDYNFAAVGIPGLTFNVRYVKGDQVDPQRIASVKGRA 367
            YL +  QV+ FA A ER+W +RYDY+F A+G+PGLTF  RY+ GD +       V G +
Sbjct: 322 PYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNI------KVPGSS 375

Query: 368 LAAGDGEGREWERTTDITYVVQSGALRNVSLRWRNASMRSNF---ADAADENRVIVGYTF 424
           +     EG+EWER T+  Y VQSG  ++VS+R RN++ RSN+   A   DE RVIV Y F
Sbjct: 376 V-----EGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNF 430