Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  320 bits (819), Expect = 2e-91
 Identities = 226/664 (34%), Positives = 311/664 (46%), Gaps = 59/664 (8%)

Query: 18  SEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHGLVS 77
           SEF+V  F   E+IS P+R  +ELVS + D+D   LL + V       +   R VHGLV 
Sbjct: 19  SEFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGF---DDRGRGVHGLVY 75

Query: 78  TFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGV--NAYELK 135
             +QG++G   TRY+  + P LA  G  S+ RIFQ KTVPQI+  +L+ QG+  + +E +
Sbjct: 76  RMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFEFR 135

Query: 136 CLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGA 195
               +  RE+CVQ GETDL F+ RL AE GI Y F H+   HLL+  D            
Sbjct: 136 LSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVFGD------------ 183

Query: 196 IKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQ 255
               D+      D   P    Y    G     P ++R     Q RT     RDY F  P 
Sbjct: 184 ----DQTVFVQADPPTP----YTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPS 235

Query: 256 YRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAEVEGDDVR 315
              E +        Q    E   YPG +   A G       L   R D R+A   GD+  
Sbjct: 236 LALESEV----TGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPA 291

Query: 316 LQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAA-----DSQQGTRYKQEALL 370
           L  G    L  HPRED N  W    V HEG Q   L+E        D +QG  Y+ E   
Sbjct: 292 LGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQG--YRNEFSA 349

Query: 371 VPGRTEWRPA--PLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFSS 428
            P    +RP     P+P I G   A V GP   EI+CD++GRVKV   WDR+ E+N+ SS
Sbjct: 350 TPWDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSS 409

Query: 429 CWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKT 488
           CW+RV+ GWA   +GS+ IPR+G +V++ +VN D D P++ G         P DLP  KT
Sbjct: 410 CWLRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKT 469

Query: 489 RMTIKSQTHK-GEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTERVERD 547
           R   +SQ+   G G+NELR ED  G +E+++ A+RD    V HD    V  +    ++ +
Sbjct: 470 RSVFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGESHHELQGE 529

Query: 548 ETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDI 607
           E      +R  D+ +D+ + +G +R    G    +  G++  I  G              
Sbjct: 530 ELRITHGNRLTDLKQDDHLMVGGSRQVRAGQTIQIGAGQSVVIEGG-------------- 575

Query: 608 TKANHTVEIGGHREQVVAG----HSTLQTGEAIRHTTKVYDIQVSESLTIRSPAGLLRVD 663
             A  T++ GG    + AG       +Q G A   T       + E++    PA L RV 
Sbjct: 576 --ATVTIQAGGQSITLCAGGIFSSVPIQLGSAPAATAAPLTPGLKETVLAVIPAPLSRVQ 633

Query: 664 GAGI 667
            A +
Sbjct: 634 VASL 637