Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  287 bits (734), Expect = 1e-81
 Identities = 187/614 (30%), Positives = 289/614 (47%), Gaps = 35/614 (5%)

Query: 19  EFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHGLVST 78
           + +V++F+  E +  PF + +++VS    +D   LL +P      + +  L   HG V  
Sbjct: 20  DLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDGL---HGQVYA 76

Query: 79  FSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGV--NAYELKC 136
             + + G   TRY   + P LA    R + RIFQQ++VPQI+  +L++ G+  +AY  + 
Sbjct: 77  IGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFE- 135

Query: 137 LDP--HQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRG 194
           L P  +  R FCVQ  E+DL F+ RL  EEGI Y F H+   HLL+  D      ++   
Sbjct: 136 LGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVFPRL--- 192

Query: 195 AIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHP 254
                            P Q  Y + GG     P ++R      +R+ + V+RDY F HP
Sbjct: 193 -----------------PVQC-YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHP 234

Query: 255 QYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAEVEGDDV 314
                   +D++    +L  E + YP  +     G       L   + D   A  + D  
Sbjct: 235 SVH----LHDSAGAASTLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQP 290

Query: 315 RLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEALLVPGR 374
            L+ G    + +HP    N  W   SV HEG Q   L+E    +     Y+      P +
Sbjct: 291 VLRSGHFLEIRDHPDPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQ 350

Query: 375 TEWRPAPL-PKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFSSCWVRV 433
              RP+    KP I+G   ATV GP GE+++CD +GRVKV F WDR  E ++ SSCW+RV
Sbjct: 351 AVHRPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRV 410

Query: 434 SQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIK 493
           + GWAG  +G+  IPR+G +V++ +++ DPD+P+I G        P Y LP HKTR  ++
Sbjct: 411 ASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLR 470

Query: 494 SQTH-KGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTERVERDETISI 552
           S +   GEG NEL  ED  G + V++ A+RD    + HD    V  +R E +    T  +
Sbjct: 471 SSSSLGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHL 530

Query: 553 GQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDITKANH 612
             +    +  D  V +  +   ++  D    + +   I  G+    + G        A  
Sbjct: 531 KSEEHRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAEL 590

Query: 613 TVEIGGHREQVVAG 626
           +++ GG    + AG
Sbjct: 591 SLKAGGEHLVIQAG 604