Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 884 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  248 bits (634), Expect = 7e-70
 Identities = 188/661 (28%), Positives = 306/661 (46%), Gaps = 53/661 (8%)

Query: 11  FQPLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLR 70
           F  LVGR           EA+S    L L+L++  + +D   LL K    ++ Q E   R
Sbjct: 17  FHRLVGR-----------EALSQVHALDLDLLANSNAIDARALLGKGATVSM-QTETGRR 64

Query: 71  YVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVN 130
           Y+ G+V++F   +    R+ Y+  + P L  A  RS++R+FQ++TVP+I+  +L R G  
Sbjct: 65  YLGGIVTSFGLAQEDARRSFYKMRLRPWLWLATRRSDFRVFQERTVPEIITAVLARYGY- 123

Query: 131 AYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQ 190
             E K    ++   +CVQ GE D  F+ARL   EGI + F H   +H+L+  D +     
Sbjct: 124 PMEQKLRHSYRAWNYCVQYGEDDCSFIARLCEHEGIHFHFRHEADRHVLVFADDIA---- 179

Query: 191 ISRGAIKTDDEDEGFHNDDVGPDQVLYR-----SVGGGDQARPCLRRLRYSEQVRTARQV 245
                        G H    G + V Y       + GG +    +      E+VR+ R  
Sbjct: 180 -------------GSHGPLPGGETVRYHPHEQSGMTGGPEPGERIHEWELVEEVRSGRHY 226

Query: 246 QRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDAR 305
           +  + F HP          +   H+  ++E +++PG + R   G      R         
Sbjct: 227 RSHFDFEHPGADLSFMRRASPG-HEHDDHELYEWPGNHVRHDDGETCARIRNEEQLSGRS 285

Query: 306 IAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQG-TRY 364
            A    +   L PG +  L  HPR D N  +  + V +   +     E    ++    R+
Sbjct: 286 RARGRSNLRELAPGHTMRLTGHPRADQNRQYLLLGVSYHLRENLEASEGTGHAEGSFQRF 345

Query: 365 KQEALLVPGRTEWRPA-PLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESEN 423
             +AL  P    WRP    PKPR DGP  A VVGP GEEI+ D++GRVKV F WDR   +
Sbjct: 346 AFDAL--PTSCAWRPPRTTPKPRTDGPQTALVVGPAGEEIWTDRYGRVKVRFHWDRLGRH 403

Query: 424 NEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDL 483
           +E +SCWVRVS  WAG ++G+ A+PRIGQ+VI+ ++N DPD P+ITGR +  +++P + L
Sbjct: 404 DEHASCWVRVSTSWAGAAFGAAALPRIGQEVIVDFLNGDPDFPIITGRVHNADEMPAWQL 463

Query: 484 PEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTER 543
           P       I+S+   G   N L  +D  G+ +  + ++  Q++ +      R+ +    +
Sbjct: 464 PGQAHLSGIRSREPGGGRSNHLALDDTNGKVQAQLRSDH-QSSSLGLGHIARIEDTAGRK 522

Query: 544 VERDETISIGQDRREDIARDESVGI-----GQNRVHEIGNDDSLSIGRNHRITTGKDRIE 598
            +R +   +  D    I   E + I     G  + H I   ++++     R+  G+   E
Sbjct: 523 EDRGQGFELRTDGHGAIRASEGLLITTEARGNAQAHIIDMGETVA-----RLADGQALHE 577

Query: 599 QVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTTKVYDIQVSESLTIRSPAG 658
           ++    ++  KA+   +      ++ A H  ++ G        V+    +  L + SPAG
Sbjct: 578 RLSKAARE-AKAHEAGDQDTVAMELKAQHDEIR-GSGGDPAQGVFPELQAPHLVLASPAG 635

Query: 659 L 659
           +
Sbjct: 636 I 636