Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 791 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  246 bits (627), Expect = 4e-69
 Identities = 196/705 (27%), Positives = 299/705 (42%), Gaps = 80/705 (11%)

Query: 29  EAISSPFRLQLELVSFEDDVDFAQLL----DKPVLFTLWQGERPLRYVHGLVSTFSQGET 84
           EA++ P   +L ++S    +D   +L    D  + F    G    R+  G    F +   
Sbjct: 27  EALARPSAYELTVLSKNKAIDAKDILGRAFDVVIEFKDADGGTHERHCQGHAVRFVRAGH 86

Query: 85  GFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLD----PH 140
                 YR  +         R+N RI Q+K V ++L+ + +   +  ++    D     H
Sbjct: 87  VGRHYEYRITLRSWFWLLTKRTNSRILQEKKVLEVLDAVFEDSPIKRFKKTRADNVIGTH 146

Query: 141 QVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDD 200
             R +CVQ  E+D  F++RL  +EGI Y FD                    + G +   D
Sbjct: 147 NPRRYCVQHQESDYGFLSRLLEDEGIYYWFD-----------------AHGAPGTMHLSD 189

Query: 201 EDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEH 260
             +  H      D + + +    +     + R     Q  T +   RD  F   + +   
Sbjct: 190 ASDIAHEKLPANDTLHHMATDASEARFNEVSRWVSGRQFGTGKHASRDSDFKAIKKKLGA 249

Query: 261 QAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALR--HDARIAEVEGDDVRLQP 318
            A D S  H+  + E F++PG Y     G      R   LR   D   A     DV    
Sbjct: 250 DA-DASGEHELASLEMFEFPGGYFTGDEGESRAKLRGDELRARRDRHWALTPWPDVAAGR 308

Query: 319 GLSFTLIEHPREDLNVHWR----TVSVHHEGTQFTS-----------------LQEEAAD 357
           G  F     P    N  +     T    H G +  S                 L+++A +
Sbjct: 309 GFKFE--GDPDGTRNGEYIIAACTFVASHRGYEGVSASAASAARPVQAALAEVLRDDAVN 366

Query: 358 S-------------------QQGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGP 398
           +                   Q GT      ++   R    P   P+  + GP  A VVGP
Sbjct: 367 ADTLQVLEDLIAATPALAAGQPGTSAFLLTVMPADRPFRAPRLTPRVTMPGPQTAIVVGP 426

Query: 399 KGEEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQY 458
           KG+E++ D  GRVKV F WDR  E++E S+CWVRVSQ WAG  WG    PRIGQ+VI+ +
Sbjct: 427 KGDELHVDDHGRVKVHFHWDRYDESDEKSTCWVRVSQPWAGKGWGGYFAPRIGQEVIVDF 486

Query: 459 VNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFI 518
           +N DPD+P+I GR Y  +Q  P+         T  +       FNE RFED+ G+++V++
Sbjct: 487 LNGDPDRPIIMGRVYNDDQPIPFKSHTQSGFRTRSTPKGNAANFNEFRFEDDKGKEQVYL 546

Query: 519 HAERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGN 578
           HAER+ +  V+ DET  VG+DRT+ V  DE + I  DR E++  +E++ I   R   +  
Sbjct: 547 HAERNLDVEVEADETRNVGHDRTKTVGHDEKVKIKNDRTEEVTGNETITIHGKRELTVDK 606

Query: 579 DDSLSIGRNH--RIT-------TGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHST 629
           D  ++I  NH   +T       TG  R+    NH Q + + N T+++ G R   V G  T
Sbjct: 607 DQYVTIKTNHSEEVTGWKSTWVTGNHRLSTSANHDQTV-QGNETIDVSGTRSDTVVGAVT 665

Query: 630 LQTGEAIRHTTKVYDIQVSESLTIRSPAGLLRVDGAGITLDGLAL 674
            + G   +  T    +  +  +T  +PAG   V   G  +  ++L
Sbjct: 666 QKVGPFTQTVTGAMTVTAAGPITFNAPAGFTVVAPGGTKIIDMSL 710