Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 792 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  247 bits (630), Expect = 2e-69
 Identities = 205/715 (28%), Positives = 307/715 (42%), Gaps = 69/715 (9%)

Query: 29  EAISSPFRLQLELVSFEDDVDFAQLL----DKPVLFTLWQGERPLRYVHGLVSTFSQGET 84
           EA++     +L ++S    +D   +L    D  + F    G R +R+  G    F +   
Sbjct: 27  EALARASSYELTVLSKSRTLDARDILGRAFDVSIEFEDADGARHVRHCQGHAVRFMRAGH 86

Query: 85  GFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLD----PH 140
                 YR  +         R N RI Q K V ++L+ + +   +  ++    D     H
Sbjct: 87  VGRYFEYRIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKRFKKTRADNVIGTH 146

Query: 141 QVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDD 200
           + R +CVQ  E+D  F++RL  +EGI Y FD                    + G +   D
Sbjct: 147 EPRRYCVQHQESDYQFLSRLLEDEGIYYWFD-----------------AHDAPGTMHLSD 189

Query: 201 EDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEH 260
             +  H+       + +   G  +     + R     Q  T +   RD  F   + + E 
Sbjct: 190 ASDLAHDKLPAASTLNFMPAGATEPRDNEISRWISERQFDTGKYASRDSNFKSIKKKLEA 249

Query: 261 QAYDNSNTHQSLNYERFDYPGRYKR--DAVGVPFTATRLTALRHDARIAEVEGDDVRLQP 318
              +      S  +E F++ G Y    DA             R     A     DV    
Sbjct: 250 TGGEPDKCELS-EFEAFEFAGGYFSGGDADDKGKLRGEEIGARRQRHFALTRWPDVAA-- 306

Query: 319 GLSFTLIEHPRE----DLNVHWRTVSVHHEGTQFT---------------SLQEEA--AD 357
           G SFT    P      D  +   T    H G +                 +L+++A  AD
Sbjct: 307 GRSFTFKGDPDAARDGDYVIAACTFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCAD 366

Query: 358 SQQGTR--YKQEALLVPGRT--------------EWRPAPL-PKPRIDGPHMATVVGPKG 400
           +    R    Q   L  GR                +RP  L P+ R+ GP  A VVGP G
Sbjct: 367 TLPVLRELVAQTPALRAGRNGDSAFLLTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDG 426

Query: 401 EEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVN 460
           EEI+ D +GRVKV F WDR  ++NE S+CWVRVSQ WAG  WG   IPRIGQ+VI+ ++N
Sbjct: 427 EEIHADDFGRVKVHFHWDRYDKSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLN 486

Query: 461 ADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHA 520
            DPD+P++ GR Y  +Q  P+         T  +        NE RFED+ G ++V++HA
Sbjct: 487 GDPDRPLVIGRVYNDDQPIPFGSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLHA 546

Query: 521 ERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDD 580
           E++Q+  V++DET  VG+DR + V+ DET+ +  DR E +  +E + IG NR   +GN++
Sbjct: 547 EKNQDIEVENDETHWVGHDRKKTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNNE 606

Query: 581 SLSIGRNHRITTGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTT 640
           ++SIG N   T G +    +G++R     A+ T  +   R   V  + T+  G A   T 
Sbjct: 607 TISIGVNRTETVGSNETITIGSNRTITVGASETATVALQRTHTVGVNETITVGAAQEITV 666

Query: 641 -KVYDIQVSESLTIRSPAGLLRVDGAGITLDGLALAFKGPVSQQATGSNRVTSTS 694
             V  + V  S TI   A      GA  ++D  A       S +A    +  STS
Sbjct: 667 GAVQAVTVGASQTISVGANQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTS 721



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 532 ETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNH--- 588
           +T  VG +++  +  + ++ +G +   ++  DE+  +G+ R   +G DDSLS+G+N    
Sbjct: 678 QTISVGANQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTSVGKDDSLSVGKNLVIS 737

Query: 589 -----RITTGKDRI 597
                 ITTG   I
Sbjct: 738 AGDSISITTGSASI 751



 Score = 40.0 bits (92), Expect = 5e-07
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 523 DQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSL 582
           +Q++ +  + +  VG + T  V  DE  S+G+ R   + +D+S+ +G+N V   G+  S+
Sbjct: 685 NQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTSVGKDDSLSVGKNLVISAGDSISI 744

Query: 583 SIGRNHRITTGKD 595
           + G +  IT  KD
Sbjct: 745 TTG-SASITMKKD 756