Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 646 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  261 bits (668), Expect = 6e-74
 Identities = 201/708 (28%), Positives = 316/708 (44%), Gaps = 87/708 (12%)

Query: 4   QSDLRFTFQPLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLW 63
           Q +   T Q  +G  +  + +F+  E +S  F   L + S  D +  A L+      TL 
Sbjct: 7   QHNAFLTVQTALGPEDLLLDTFQATEGLSRLFACSLTMRSPLDTIKGADLIGTSATVTLQ 66

Query: 64  QGERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIM 123
           + E+  R  +G+VS F+   +  D   Y   + P +    L  +  I+Q  + P I++ +
Sbjct: 67  RPEKNARLFNGIVSRFTYLGSNQDFATYTLELVPRMWLLTLGRDRVIYQNLSTPDIVQKV 126

Query: 124 LKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITD 183
           L    V+         +  RE+CV+  ET  DF++RL  EEGI Y F  T   H L++ D
Sbjct: 127 LGDFAVDC-RTALEGTYAPREYCVRYDETAFDFVSRLMEEEGIFYFFTFTADSHTLVLAD 185

Query: 184 RLLALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTAR 243
                   S+ A ++    +          ++L RS  GG      + R     ++ T  
Sbjct: 186 --------SKSAYESCPNAQ----------ELLVRSGEGGVGHTHSVTRFESDARLVTKD 227

Query: 244 QVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHD 303
               DY F  P       A +++   +  +YE   +P R    A        R+    H 
Sbjct: 228 HEVDDYDFLTPD--TSLLAKNSAKAGRGSDYE---FPSRVAASAASA---RARIRQEEHQ 279

Query: 304 ARIAEVEGDDV--RLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQG 361
                  GD     L PG +F L EHPR DLN  +   SVHH                + 
Sbjct: 280 VGSQSGRGDSHCHYLTPGTTFKLKEHPRADLNDEYVVHSVHHHA--------------EN 325

Query: 362 TRYKQEALLVPGRTEWRPAPL-PKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRE 420
             Y      +P  T +RP  L P+P + G H A VVGP G E++ DQ GR+KV FPWDR 
Sbjct: 326 ENYSNSFETLPLNTPFRPPRLTPRPVVAGSHTARVVGPSGHEVWTDQHGRIKVQFPWDRL 385

Query: 421 SENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPP 480
            + ++ SSCW+RVSQ WAG  WG++ +PRIGQ+V++ YV+ DPD+P+++G  Y G  + P
Sbjct: 386 GKKDDKSSCWMRVSQIWAGEGWGALFLPRIGQEVVVSYVDGDPDRPLVSGSVYNGTHVTP 445

Query: 481 YDLPEHKTRMTIKSQT-HKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRV--G 537
            +LP   ++ TI+S++   G   NELRFED+   +E+++HA++D    +++D TT+V  G
Sbjct: 446 VELPSASSQSTIRSRSLPGGSAGNELRFEDKKDAEELYMHAQKDMRTEIENDLTTKVIAG 505

Query: 538 NDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRI 597
           N+     + + T+ +                  N  H +                G   +
Sbjct: 506 NELHTVTKGNRTVKVDTG---------------NETHSV---------------KGTRAL 535

Query: 598 EQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQ-TGEAIRHTTKVYDIQVSESL----- 651
           E  GN   D  KAN T  + G+ E  V G+  +  TG  +  + +  D++    L     
Sbjct: 536 EVTGNETHD-NKANFTQTVSGNYELKVTGNLVIDVTGTLLIKSAQTLDLKAGTDLGANAG 594

Query: 652 -TIRSPAG--LLRVDGAGITLDGLALAFKGPVSQQATGSNRVTSTSGV 696
              ++ AG  L    GA +T +  +++ K        G   VT   G+
Sbjct: 595 INFKAEAGVALSAKGGASLTNEAPSISSKASAMNAVEGGGMVTLKGGL 642