Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 906 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  246 bits (628), Expect = 4e-69
 Identities = 178/552 (32%), Positives = 261/552 (47%), Gaps = 45/552 (8%)

Query: 11  FQPLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLR 70
           F+ LVGR           EA+S  +   +EL+S  + +D   LL +P    +       R
Sbjct: 7   FRKLVGR-----------EALSRLYAFDVELLSNSNGIDPKALLGRPATVAMQTESGGTR 55

Query: 71  YVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVN 130
           Y+ G+ S F  GE    ++ YR  + P L  A LRS++RIFQ K+VP IL  +L   G  
Sbjct: 56  YLSGIASFFGLGEEDARQSFYRMTLRPWLWLATLRSDFRIFQNKSVPDILTEVLGGYGY- 114

Query: 131 AYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQ 190
           A E +    ++  ++CVQ  E+D  +++RL   EGI Y F H   +H+L+  D + A  +
Sbjct: 115 AMEQRLSREYRAWDYCVQYHESDFSYVSRLCELEGIGYYFRHEEHRHVLVFADDIAASHE 174

Query: 191 ISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYS--EQVRTARQVQRD 248
              G          FH  +          +  G +A P  R   +   E++R+      D
Sbjct: 175 PLPGGGTVR-----FHPSETS-------GMTSGSRASPGERIYEWKSGEEMRSGFHFTDD 222

Query: 249 YTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAE 308
           Y F  P      Q    +  H    +ER+++PG YK+   G  +T  R      +  +A 
Sbjct: 223 YDFLKPSADLSGQRQAPAG-HTHDYFERYEWPGGYKQHEDGEVYTRIRTEEQHSERCLAS 281

Query: 309 VEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEA 368
              +   L PG  F L  HPR+D N  +   SV +E  Q      E A      R+  EA
Sbjct: 282 GRSNKRELAPGHVFELANHPRQDQNRKYLLTSVEYE-LQENMQASEGAGEGSVQRFAFEA 340

Query: 369 LLVPGRTEWRPAPLP-KPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFS 427
              P    WRP  +  KPR  GP  A VVGPK EE + D+ GRVKV F WDR    NE S
Sbjct: 341 Q--PADHAWRPRRVTLKPRTRGPQTAIVVGPKNEETWTDRHGRVKVEFHWDRLGARNENS 398

Query: 428 SCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHK 487
           SCWVRVS GWAG ++G+ A+PR+G +V++ ++N DPD P+ITGR +    +P + LPE  
Sbjct: 399 SCWVRVSMGWAGDTFGTAALPRVGHEVVVDFLNGDPDCPIITGRVFNAANMPAWRLPEQA 458

Query: 488 TRMTIKSQ---THKGEGF------NELRFEDELGRQEVFIHAER-----DQNNIVKHDET 533
               ++S+    + G G       N L  +D  G+ +  + ++         +I + D T
Sbjct: 459 NLSGMRSRELNANDGPGHAGGSRGNHLVLDDHPGKIQAQLKSDHLCSSLSLGHIGRIDGT 518

Query: 534 TRVGNDRTERVE 545
               +DR E  E
Sbjct: 519 EGRTDDRGEGAE 530