Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 988 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  240 bits (612), Expect = 3e-67
 Identities = 160/520 (30%), Positives = 247/520 (47%), Gaps = 35/520 (6%)

Query: 11  FQPLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLR 70
           F  LVGR           EA+S  +   ++L+   + +D   LL K    ++ + E  +R
Sbjct: 17  FHQLVGR-----------EALSQLYAFDIDLLGSSNGIDAKALLGKAATVSV-ETEGGVR 64

Query: 71  YVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVN 130
           Y+ G+ + F   +     + YR  + P L  A LRS++RIFQ K+VP IL  +L   G  
Sbjct: 65  YLGGIATRFGLQQEDARHSFYRLRMRPWLWLATLRSDFRIFQAKSVPDILTEVLGPYGYP 124

Query: 131 AYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQ 190
             +      ++  ++CVQ  E+D DF++RL   EGI Y F H   QH+L+  D +     
Sbjct: 125 VEQKLSRADYRRWDYCVQYHESDFDFVSRLCELEGIYYYFRHEQSQHVLVFADDMA---- 180

Query: 191 ISRGAIKTDDEDEGFHNDDVGPDQVLYRSVG-GGDQARPCLRRLRYSEQVRTARQVQRDY 249
                        G H+   G ++V Y  +   G   R  +     +E+VR       DY
Sbjct: 181 -------------GSHSPLPGGEEVRYHPLEKSGMGQRERIYAWEIAEEVRPGHHYNDDY 227

Query: 250 TFTHPQYRQEH-QAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAE 308
            F  P+    H +     + H S  YE +++PG + +   G  +   R            
Sbjct: 228 DFEKPKAELSHLRQMPPGHDHDS--YENYEWPGGFVQHGDGETYARIRNEEQLSQRNRVT 285

Query: 309 VEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEA 368
              +   L  G +  L  HP+ D N  +  VSV +   Q      E A+  +G+  +   
Sbjct: 286 GRANLRELATGHTLRLTGHPKADQNRQYLLVSVSYH-LQENLQASEGAEGTEGSVQRFAF 344

Query: 369 LLVPGRTEWRPA-PLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFS 427
              P    WRPA   PKPR  GP  A VVGP GE+I+ DQ+GR+KV F WDR  + NE S
Sbjct: 345 DAQPTSYPWRPARTTPKPRTRGPQTAMVVGPAGEQIWTDQYGRIKVQFHWDRIGKENENS 404

Query: 428 SCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHK 487
           SCWVRVS  WAG ++G  ++PRIG +VI+ ++N DPD P++TG  +  + +P ++LP  K
Sbjct: 405 SCWVRVSTAWAGATFGMTSVPRIGMEVIVDFLNGDPDYPIVTGCVHNADTMPAWELPGQK 464

Query: 488 TRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNI 527
               I+S+   G   N L  +D  G+ +  + ++   + +
Sbjct: 465 HLSGIRSRELGGGRGNHLVLDDTQGKIQAQLRSDHQSSQL 504