Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 780 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  273 bits (697), Expect = 3e-77
 Identities = 195/657 (29%), Positives = 325/657 (49%), Gaps = 50/657 (7%)

Query: 14  LVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVH 73
           ++G  + +  +    E +S  F  ++++V    +++  QLL   +   L     P R+++
Sbjct: 10  VLGAEQLKFRAMRGQEGLSQLFEFEVDMVGTSFNIELKQLLGTSLTLELADDGGP-RFLN 68

Query: 74  GLVSTFS----QGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGV 129
           G V  F       ETG     YRALV+P L      ++ RIFQ K+VP++L+ +L + G 
Sbjct: 69  GTVVRFELVGRANETGRHYI-YRALVQPWLWYLTRTTDCRIFQNKSVPEVLDEVLGKYGF 127

Query: 130 NAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALG 189
             +E +    ++  E CVQ  E+D  F++RL   EGI Y F+H    HLL+++D      
Sbjct: 128 E-FEKRLTASYRPWENCVQYQESDFAFVSRLMEHEGIAYHFEHGNGTHLLVLSD------ 180

Query: 190 QISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQA-RPCLRRLRYSEQVRTARQVQRD 248
                       D G ++   G   + YR       A  PC+ + R SEQ+ + R +  D
Sbjct: 181 ------------DTGGYSPLPGHATIAYRPRDRVLNAMEPCIDQWRVSEQITSGRVMLDD 228

Query: 249 YTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAE 308
           + F   +   +    D    H    YE +++ G Y     G  +   RL  L+    +A 
Sbjct: 229 FDFKKSRASLQSVQQDPKG-HDHSTYEVYEWLGGYSEHQQGDAYAKIRLQELQCAHELAR 287

Query: 309 VEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEA 368
              + V + PG  F +   PRE  N  +      ++  +     E ++     +  + + 
Sbjct: 288 GHTNVVGMAPGYLFQMTHCPREADNREYLVTETRYDLQE----PEYSSGGSSESVCEFDF 343

Query: 369 LLVPGRTEWRPAP-LPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFS 427
            ++P    +RPA   P+PR +GP  ATVVGP  EEI+ D++GRVK+ F WDR  + +E S
Sbjct: 344 TVLPSSVAYRPARNTPRPRTNGPQTATVVGP--EEIWTDRFGRVKLQFRWDRYGQGDENS 401

Query: 428 SCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHK 487
           SCWVRVS  WAG ++G+M +PR+GQ+VI+ ++  +PD+P+ITGR Y  +Q+PP++LP + 
Sbjct: 402 SCWVRVSSSWAGANFGTMHMPRVGQEVIVDFIGGEPDRPIITGRVYNSDQMPPWELPANA 461

Query: 488 TRMTIKSQTHKGEGFNE---LRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTERV 544
           T   I +++  G   N+   LRFED  G +++++HAER+ +  V+ DET      RT  +
Sbjct: 462 TASGILTRSSSGGAANQANMLRFEDRTGSEQIWLHAERNLDVEVEADETHTTDGTRTTLI 521

Query: 545 ERDETISIGQDRREDIARD--ESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGN 602
           +  E+ +       DI     E++  G  R    G  +++S G N  I+ GK R+   G 
Sbjct: 522 KGHESATYQDGETRDITAGARETITGGDTRDVTGGFTETVSGGVNQTISGGKTRMLS-GG 580

Query: 603 HRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTT--KVYDIQVSESLTIRSPA 657
            +  IT   ++   GG+       H T+  G+ +R  +  +   I  S ++ +  P+
Sbjct: 581 LQDTITGGVNSAISGGY-------HGTID-GQEVRFVSAGRQDTIDTSNTVLVNGPS 629