Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  916 bits (2368), Expect = 0.0
 Identities = 445/616 (72%), Positives = 506/616 (82%), Gaps = 9/616 (1%)

Query: 4   QSDLRFTFQPLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLW 63
           QSD RF+FQ L GR+EFEVVSF+LDE ++ PF L LELVS+E D+DF  +LDKP LFTL+
Sbjct: 3   QSDFRFSFQALAGRTEFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLY 62

Query: 64  QGERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIM 123
             +RPLR+VHGLVS FSQGETGF RTRY A+VEP LARA LRSNWRIFQQKTVPQILE+M
Sbjct: 63  SADRPLRHVHGLVSAFSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELM 122

Query: 124 LKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITD 183
            KRQG+  +ELK    HQVREFCVQAGETDLDF+ RLAAEEG VYRF+H  +QH LI+TD
Sbjct: 123 FKRQGITRFELKSSAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTD 182

Query: 184 RLLALGQISRGAIKT-DDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTA 242
           RLL+ G +SRGA+K  DDE      DDVGPD+VLY +  GGDQAR CLRRLRY EQVRTA
Sbjct: 183 RLLSFGLLSRGALKAEDDEALWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTA 242

Query: 243 RQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRH 302
           RQVQRDYTFT+P YRQEH+A  +  THQSL+YERFDYPGRYKRDAVG PFT TRLTALRH
Sbjct: 243 RQVQRDYTFTNPAYRQEHKAQTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRH 302

Query: 303 DARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGT 362
           DA +AEV+GDDVRLQ GLSFTL+ HPREDLNVHWR +S+ HEGTQ TSLQEEAA ++QGT
Sbjct: 303 DACLAEVQGDDVRLQTGLSFTLVGHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAEQGT 362

Query: 363 RYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESE 422
           RY  +ALLV G  EWRPAP+ KPRIDGPHMATVVGP GEEIYCD+WGRVKVSFPWDRES+
Sbjct: 363 RYVNDALLVQGMAEWRPAPMAKPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESK 422

Query: 423 NNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYD 482
           NNEFSSCWV VSQGWAGGSWGSMAIPRIGQDVI+QYVN DPDQPMITGRTYCG+QLPPYD
Sbjct: 423 NNEFSSCWVWVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYD 482

Query: 483 LPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTE 542
           LP+HKTRMTIKSQTHKG+GFNELRFEDELGRQEVFIHAERDQNN+VKH+ETT +GNDR+E
Sbjct: 483 LPDHKTRMTIKSQTHKGDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSE 542

Query: 543 RVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGN 602
           RVE DE + IG +R   +   +   +   +V  IG   SL++G    +  G +  EQV  
Sbjct: 543 RVEHDEVVDIGGNRSVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVAL 602

Query: 603 HRQDITKANHTVEIGG 618
            ++        V++GG
Sbjct: 603 DKR--------VQVGG 610