Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 846 a.a., Rhs element Vgr protein from Enterobacter asburiae PDN3

 Score =  268 bits (686), Expect = 6e-76
 Identities = 187/621 (30%), Positives = 302/621 (48%), Gaps = 43/621 (6%)

Query: 29  EAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTL-WQGERPLRYVHGLVSTFSQGETGFD 87
           EA+S  F L L ++  +  +D ++LL +PV  T+  Q     RYV+G ++  +       
Sbjct: 23  EAMSESFALTLTVLGTDARIDRSKLLGQPVTVTIPTQNLLTSRYVNGKITRVAVSAVELT 82

Query: 88  RTRY---RALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLDPHQVRE 144
            TRY   +  VEP L       N RIFQ +TVPQI++ +L    VN  E K    ++V +
Sbjct: 83  GTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTVPQIVKTLLGEHQVNV-EDKLTGSYRVWD 141

Query: 145 FCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDDEDEG 204
           +CVQ  E+ LDF++RL   EGI Y F H   +H L++TD                 + + 
Sbjct: 142 YCVQYQESSLDFISRLMELEGIAYHFSHEADKHTLVLTDAAT--------------QHQP 187

Query: 205 FHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEHQAYD 264
           F   +V P    +++  GG      + +    + V        DY F  P      QA  
Sbjct: 188 FSGYEVIP---YHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPN-AWLFQAQQ 243

Query: 265 NSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAEVEGDDVRLQPGLSFTL 324
           N  + +  + + +D+PGR+     G  +   R    + + +  +       + PG +FTL
Sbjct: 244 NPASPKPGSIDVYDWPGRFVDKGHGEFYARIRQERWQVEHQQIQATATAAGIAPGHTFTL 303

Query: 325 IEHPREDLNVHWRTVSV--HHEGTQFTSLQEEAADSQQGTRYKQEALLVPGRTEWRPAPL 382
              P    N  +   +   H E  ++ S + E       T ++ +  ++P    +RPA  
Sbjct: 304 TNAPFFSDNGEYLVTAAGYHFEENRYASGEGE-------TIHRTDFTVIPSAVVYRPAQT 356

Query: 383 PK-PRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGS 441
              PR  GP  A VVGP GE I+ D++GRVKV F WDR ++ ++ SSCWVRVS  WAG  
Sbjct: 357 TAWPRTYGPQTAKVVGPNGESIWTDKYGRVKVKFHWDRLAKGDDTSSCWVRVSSAWAGQG 416

Query: 442 WGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKG-- 499
           +G + IPR+G +V++ ++N DPD+P+ITGR Y    +PP+ LP   T+M   S++  G  
Sbjct: 417 YGGVQIPRVGDEVVVDFINGDPDRPIITGRVYNDASMPPWALPAAATQMGFMSRSKGGSV 476

Query: 500 EGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRRED 559
           +  N LRFED+ G ++V+I AER+ +  VK+DET  VG  R+  V+++E   +  ++ + 
Sbjct: 477 DNANALRFEDKAGAEQVWIQAERNMDTSVKNDETHSVGGARSHYVKKNELHRVEANQTQA 536

Query: 560 IARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDITKANHTVEIGGH 619
           +     +  G+ ++        ++ G   R+ +G+  IE   N + ++        IG  
Sbjct: 537 VKGGTEILTGKGKLDASVEQYVIASGTKLRLVSGESAIELNANGKINL--------IGKE 588

Query: 620 REQVVAGHSTLQTGEAIRHTT 640
               V G   + TG  +   T
Sbjct: 589 FNFFVEGDGYITTGGKLHLNT 609