Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 702 a.a., type VI secretion system effector VgrG from Escherichia coli ECRC101

 Score =  397 bits (1021), Expect = e-115
 Identities = 238/686 (34%), Positives = 365/686 (53%), Gaps = 46/686 (6%)

Query: 7   LRFTFQ-PLVGRSEFEVVSFELDEAISSPFRLQLELVSFED-DVDFAQLLDKPVLFTLWQ 64
           LRFT +   +    F VVSF L++++SS F L L LVS +   ++FAQ+LDK    T+WQ
Sbjct: 5   LRFTLEVDGLPPDAFAVVSFHLNQSLSSLFSLDLSLVSQQFLSLEFAQVLDKMAYLTVWQ 64

Query: 65  GERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIML 124
           G+   R V G+V+ F  GE   ++  Y   V P L R GLR N+RIFQ + +  IL  +L
Sbjct: 65  GDDVQRRVKGVVTWFELGENDKNQMLYSMKVCPPLWRTGLRQNFRIFQNEDIESILATIL 124

Query: 125 KRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQ--HLLIIT 182
           K  GV  +     +PH  REFCVQ GETD DF+ R+AAEEGI +  +H  K     L++ 
Sbjct: 125 KENGVTEWSPLFSEPHPSREFCVQYGETDYDFLCRMAAEEGIFFYEEHAQKSIDQSLVLC 184

Query: 183 DRLLALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTA 242
           D +  L              E F        ++ +      + +  C+ + RYS Q+R +
Sbjct: 185 DTVRYL-------------PESF--------EIPWNPNTRTEVSTLCISQFRYSAQIRPS 223

Query: 243 RQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRH 302
             V +DYTF  P +            +Q   YE +DYPGR+K  A G  F   ++   R+
Sbjct: 224 SVVTKDYTFKRPGWAGRFDQEGQYQDYQRTQYEVYDYPGRFK-GAHGQNFARWQMDGWRN 282

Query: 303 DARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGT 362
           +A +A        + PG    L  HP+ +LN  W+ V+    G Q  ++         GT
Sbjct: 283 NAEVARGTSRSPEIWPGRRIVLTGHPQANLNREWQVVASELHGEQPQAVPGRRGS---GT 339

Query: 363 RYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESE 422
                  ++P    WRP PL KP +DGP  A V GP GEEI+CD+ GRV+V F WDR + 
Sbjct: 340 TLNNHFAVIPADRTWRPQPLLKPLVDGPQSAVVTGPAGEEIFCDEHGRVRVKFNWDRYNP 399

Query: 423 NNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYD 482
           +N+ SSCW+RV+Q WAG  +G++AIPR+GQ+VI+ ++N DPDQP+I GRTY      P  
Sbjct: 400 SNQDSSCWIRVAQAWAGTGFGNLAIPRVGQEVIVDFLNGDPDQPIIMGRTYHQENRTPGS 459

Query: 483 LPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTE 542
           LP  KT+MTI+S+ +KG GFNEL+F+D  G+++V+IHA+++ N  V ++ TT V N+  E
Sbjct: 460 LPGTKTQMTIRSKNYKGSGFNELKFDDATGKEQVYIHAQKNMNTEVLNNRTTDVINNHAE 519

Query: 543 RVERDETI--------SIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTG- 593
            +  ++ I        ++G ++ E +  ++ + +G  +V  IG   +L++G  ++ T G 
Sbjct: 520 TIGNNQMIAVTNNQIQTVGVNQIETVGSNQIINVGSVQVETIGLVRALTVGVAYQTTVGG 579

Query: 594 -------KDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGE-AIRHTTKVYDI 645
                    +  Q+G H+       + V++G +    V       TG+ AI    +  ++
Sbjct: 580 IMNTSVALMQSSQIGLHKSLRVGLGYDVKVGNNVTFTVGKTKKDDTGQTAIYSAGEHLEL 639

Query: 646 QVSESLTIRSPAGLLRVDGAGITLDG 671
              ++  + +  G + ++G  I L G
Sbjct: 640 CCGKARLVLTKDGQIFLNGTKIHLQG 665