Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 618 a.a., type VI secretion system tip protein VgrG from Dickeya dianthicola ME23

 Score =  468 bits (1204), Expect = e-136
 Identities = 254/636 (39%), Positives = 365/636 (57%), Gaps = 39/636 (6%)

Query: 1   MPSQSDLRFTFQP-LVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVL 59
           M + + L+FT +   +  + F VV FEL EA++ PF L L L S + D+DF  +LD+P  
Sbjct: 1   MANSTGLQFTVKVGALPETTFAVVDFELSEALNQPFALSLNLASSQADIDFGAVLDQPCE 60

Query: 60  FTLWQGERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQI 119
             +W      R V G+VS F+QG+TGF RTRY+A V P L R GLR+N R+FQ +    I
Sbjct: 61  LRVWYEGELQRRVSGIVSRFAQGDTGFRRTRYQAEVRPALWRLGLRTNARLFQTRKPDAI 120

Query: 120 LEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLL 179
           +  +L+  G+  +       H  RE+CVQ  E+DL F+ RLAAEEG+ Y  +    +H +
Sbjct: 121 ISTLLEEAGITDFAFALRHDHAAREYCVQYRESDLAFIHRLAAEEGLFYFHEFEAGKHRV 180

Query: 180 IITDRLLALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQV 239
           +  D   AL +                    GP+ + +     G      +RR RY+E V
Sbjct: 181 VFADDAGALSK--------------------GPE-LFFNLATQGLSEGAYVRRFRYAEAV 219

Query: 240 RTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTA 299
            TA    +DY+F  P Y   H    +   HQ  +Y+ FDYPGR+K+D  G  FT  RL A
Sbjct: 220 STAEVALKDYSFKTPAYGLLHNRMSSELDHQRESYQHFDYPGRFKQDPSGKAFTGYRLDA 279

Query: 300 LRHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQ 359
           LR  A     E +   L PG SFTL EHP    N+ W+ V+V H G Q  +L+EE+    
Sbjct: 280 LRAGAMTGAGESNAAALMPGSSFTLTEHPNAAFNLAWQVVAVTHSGQQPQALEEESGG-- 337

Query: 360 QGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDR 419
           + T       +V   T WR A   KPR+DGP +ATVVGP GEEIYCDQ+GR+K+ FPWDR
Sbjct: 338 EPTTLSNRFEVVKATTTWRAAMPYKPRVDGPQIATVVGPAGEEIYCDQYGRIKLQFPWDR 397

Query: 420 ESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLP 479
              +++ SSCWVRVSQGWAGG +G +AIPRIG +V++ ++  DPDQP++TGRT+      
Sbjct: 398 YGASDDQSSCWVRVSQGWAGGQYGLIAIPRIGHEVVVSFLEGDPDQPIVTGRTFHATNPS 457

Query: 480 PYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETT----- 534
           PY LP +KTR +++++THKG GFNELRFED+ G++EVFIHA++D N +V ++ +T     
Sbjct: 458 PYPLPANKTRTSLRTRTHKGAGFNELRFEDQAGQEEVFIHAQKDMNTVVLNNRSTAVNAS 517

Query: 535 ---RVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRI- 590
               VG D+T  V+ ++T+SI Q++   I   +++ +G  R   +   D+L++  +  + 
Sbjct: 518 HSENVGGDQTVVVQHNQTVSIEQNQHTGIKGTQNINVGNGRQTSVTTTDTLTVSGDVTVV 577

Query: 591 -TTGKDRIEQVG-----NHRQDITKANHTVEIGGHR 620
            T G  R+   G     +H  DI+   + + + G R
Sbjct: 578 STGGNIRLSTAGGYISIDHAGDISIVGNHLMLNGVR 613



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 594 KDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHT-------------- 639
           KD    V N+R     A+H+  +GG  + VV  H+   + E  +HT              
Sbjct: 500 KDMNTVVLNNRSTAVNASHSENVGGD-QTVVVQHNQTVSIEQNQHTGIKGTQNINVGNGR 558

Query: 640 ----TKVYDIQVSESLTIRSPAGLLRVDGAG 666
               T    + VS  +T+ S  G +R+  AG
Sbjct: 559 QTSVTTTDTLTVSGDVTVVSTGGNIRLSTAG 589