Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 617 a.a., type VI secretion system tip protein VgrG from Dickeya dianthicola ME23

 Score =  466 bits (1199), Expect = e-135
 Identities = 248/596 (41%), Positives = 354/596 (59%), Gaps = 32/596 (5%)

Query: 1   MPSQSDLRFTFQ-PLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVL 59
           M + + L+FT +   +  + F VV FEL EA++ PF L L L S + D+DF  +LD+P  
Sbjct: 1   MANSTGLQFTVKIGALPDTTFAVVDFELSEALNQPFALSLSLASSQADIDFGAVLDQPCE 60

Query: 60  FTLWQGERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQI 119
             +W      R V G+VS F+QG+TGF RTRY+A V P L R GLR+N RIFQ +    I
Sbjct: 61  LAVWYEGELQRRVSGIVSRFAQGDTGFRRTRYQAEVRPALWRLGLRTNARIFQTQKPDAI 120

Query: 120 LEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLL 179
           +  +L+  G++ +       H VRE+CVQ  E+DL F+ RLAAEEG+ Y  +    +H +
Sbjct: 121 IGTLLEEAGISDFAFALRHDHAVREYCVQYRESDLAFIHRLAAEEGLFYFHEFEAGKHRV 180

Query: 180 IITDRLLALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQV 239
           +  D   AL +                    GP+ + +     G      +RR RY+E V
Sbjct: 181 VFADDAGALPK--------------------GPE-LFFNLATQGLSEGAYVRRFRYAEAV 219

Query: 240 RTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTA 299
            TA    +DY+F  P Y   H+   N   HQ  +Y+ FDYPGR+K+D  G  FT  RL A
Sbjct: 220 STAEVALKDYSFKTPAYGLLHKKTSNELAHQRESYQHFDYPGRFKQDPSGKAFTGYRLDA 279

Query: 300 LRHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQ 359
           LR  A     E +   L PG SFTL EHP    N+ W+ V+V H G Q  +L+EE+    
Sbjct: 280 LRAGAMTGAGESNAAALMPGSSFTLTEHPNPAFNLAWQVVAVTHSGQQPQALEEESGG-- 337

Query: 360 QGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDR 419
           + T       +V   T WR A   KPR+DGP +A VVGP GEEIYCD++GRVK+ FPWDR
Sbjct: 338 EPTTISNSFEVVKATTTWRAAMPYKPRVDGPQIAMVVGPAGEEIYCDKFGRVKLQFPWDR 397

Query: 420 ESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLP 479
              +++ SSCWVRVSQGWAGG +G +AIPRIG +V++ ++  DPDQP++TGRT+      
Sbjct: 398 YGASDDQSSCWVRVSQGWAGGQYGLIAIPRIGHEVVVSFLEGDPDQPIVTGRTFHATNPS 457

Query: 480 PYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETT----- 534
           PY LP +KTR ++++ THKG GFNELRFED+ G++EVFIHA++D N +V ++ +T     
Sbjct: 458 PYPLPANKTRTSLRTSTHKGAGFNELRFEDQAGQEEVFIHAQKDMNTVVLNNRSTAVNAS 517

Query: 535 ---RVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRN 587
               VG D+T  V+ ++T+S+ +++  +I  +++V + QNR   + +++SL +  N
Sbjct: 518 HTENVGGDQTVVVQHNQTVSVKENQVTEIQGEQTVAVTQNRHTTVNDNESLQVKNN 573



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 594 KDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGE---------------AIRH 638
           KD    V N+R     A+HT  +GG +  VV  + T+   E                 RH
Sbjct: 500 KDMNTVVLNNRSTAVNASHTENVGGDQTVVVQHNQTVSVKENQVTEIQGEQTVAVTQNRH 559

Query: 639 TTKVYD---IQVSESLTIRSPAGLLRVDGAG 666
           TT V D   +QV  ++ I+S +G + +  AG
Sbjct: 560 TT-VNDNESLQVKNNIAIQSQSGDILIATAG 589