Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 816 a.a., VgrG protein from Agrobacterium fabrum C58

 Score =  247 bits (630), Expect = 2e-69
 Identities = 177/584 (30%), Positives = 273/584 (46%), Gaps = 54/584 (9%)

Query: 15  VGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDK--PVLFTLWQGERP---- 68
           +G  +       ++E +S  F ++L + + ++ V   +L+ +   V   + QG+      
Sbjct: 23  LGEDQLLPERLSVEEGVSQLFEIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGGGV 82

Query: 69  LRYVHGLVSTFSQGETGFDRTRYRAL-VEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQ 127
            R  +GLV+   +G       R  AL + P +     RS+ RI+  KT  +I+E +    
Sbjct: 83  RRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEH 142

Query: 128 GVNAYELK-CLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLL 186
           G+ A +    + P   + + VQ  ETDLD++ R   E+G+ Y F H    H L + D   
Sbjct: 143 GIPAPDTSGIISPPPAQHYSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADS-- 200

Query: 187 ALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQ--ARPCLRRLRYSEQVRTARQ 244
                + G +      +G        + ++  + G  D+       RR  Y    R    
Sbjct: 201 -----ASGWLGPSPAAQG--------EGMVRLAQGSSDRNHINDWARRFSYVSGQRAGA- 246

Query: 245 VQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDA 304
              D+ F  P                +   E ++YP R K           R  A+  D 
Sbjct: 247 ---DWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQAIEADH 303

Query: 305 RIAEVEGDDVRLQPGLSFTLIE--HPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGT 362
                      L+ G  FT  E  HP      H    + H        L  E   ++   
Sbjct: 304 DRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIVRASH----SIVDLSYETNSNEPEY 359

Query: 363 RYKQEALLVPGRTEWRPAPLPK-PRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRES 421
           R   EA  +P R    P    K PRI+G  +A V GP+GEEI+ DQ+GR+K+ FPWDR++
Sbjct: 360 RNHFEA--IPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDRKA 417

Query: 422 ENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPY 481
           + +   +CWVRVSQ W GG+WG+  IPRIG +V++ +V+ DPD+P++ G         PY
Sbjct: 418 KKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPY 477

Query: 482 DLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRT 541
           DLP +KTRM ++S +HKG+GFNE+ FEDE G++  F HA++DQ        TTRV NDRT
Sbjct: 478 DLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQ--------TTRVLNDRT 529

Query: 542 ERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIG 585
           +R++R E  S+G +R        +V +  N+ HEIG   +  +G
Sbjct: 530 KRIDRHEVASVGGNR--------AVEVSGNQKHEIGGSVNTVVG 565



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 16/131 (12%)

Query: 548 ETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDI 607
           ++ S+G  + E +   +   IGQ  V ++G   +L+IG+   +  G  +  +VG      
Sbjct: 672 QSTSVGVAKAEQVGVSKVTNIGQTEVRQVGKQQNLTIGKEQFVEIGTGQYTRVGE----- 726

Query: 608 TKANHTVEIGGHREQVVAGHSTLQTGEAIRHTTKVYDIQVSESLTIRSPAGLLRVDGAGI 667
                T+ +G            L + E      KV++I   + + + +P G + +  +GI
Sbjct: 727 ---KITINVG--------KLYNLVSEEKYHGEAKVWEIFADDEIRLSTPGGYISLTKSGI 775

Query: 668 TLDGLALAFKG 678
            L  L +  +G
Sbjct: 776 KLFALKIDIEG 786