Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 754 a.a., vgrG protein from Agrobacterium fabrum C58

 Score =  246 bits (627), Expect = 4e-69
 Identities = 180/586 (30%), Positives = 276/586 (47%), Gaps = 58/586 (9%)

Query: 15  VGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDK--PVLFTLWQGERP---- 68
           +G  +       ++E +S  F ++L + + ++ V   +L+ +   V   + QG+      
Sbjct: 23  LGEDQLLPERLSVEEGVSQLFDIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGGGV 82

Query: 69  LRYVHGLVSTFSQGETGFDRTRYRAL-VEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQ 127
            R  +GLV+   +G       R  AL + P +     RS+ RI+  KT  +I+E +    
Sbjct: 83  RRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEH 142

Query: 128 GVNAYELK-CLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLL 186
           G+ A +    + P   + + VQ  ETDLD++ R   E+G+ Y F H    H L + D   
Sbjct: 143 GIPAPDTSGIISPPPAQHYSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADS-- 200

Query: 187 ALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQ--ARPCLRRLRYSEQVRTARQ 244
                + G +      +G        +  +  + G  D+       RR  Y    R    
Sbjct: 201 -----ASGWLGPSPAAQG--------EGTVRLAQGSSDRNHINDWARRFSYVSGQRAGA- 246

Query: 245 VQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDA 304
              D+ F  P                +   E ++YP R K   V     A +L     +A
Sbjct: 247 ---DWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIK--TVEEAERAQKLRTQSIEA 301

Query: 305 RIAEVEGDDVR--LQPGLSFTLIE--HPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQ 360
               V G      L+ G  FT  E  HP      H    + H        L  E   ++ 
Sbjct: 302 DHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIVRASH----SIVDLSYETNSNEP 357

Query: 361 GTRYKQEALLVPGRTEWRPAPLPK-PRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDR 419
             R   EA  +P R    P    K PRI+G  +A V GP+GEEI+ DQ+GR+K+ FPWDR
Sbjct: 358 EYRNHFEA--IPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDR 415

Query: 420 ESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLP 479
           +++ +   +CWVRVSQ W GG+WG+  IPRIG +V++ +V+ DPD+P++ G         
Sbjct: 416 KAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSV 475

Query: 480 PYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGND 539
           PYDLP +KTRM ++S +HKG+GFNE+ FEDE G++  F HA++DQ        TTRV ND
Sbjct: 476 PYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQ--------TTRVLND 527

Query: 540 RTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIG 585
           RT+R++R E  S+G +R        +V +  N+ HEIG   +  +G
Sbjct: 528 RTKRIDRHEVASVGGNR--------AVEVSGNQKHEIGGSVNTVVG 565



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 32/70 (45%)

Query: 525 NNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSI 584
           N IV   ++  VG  R E++   +  ++GQ   E + + + + +G+  V E G+   +  
Sbjct: 665 NTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKFIMK 724

Query: 585 GRNHRITTGK 594
                I  GK
Sbjct: 725 ANGEVIILGK 734



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 551 SIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDITKA 610
           S+G  R E I   +   +GQ  +  +G    +++G    I  G  +          I KA
Sbjct: 675 SVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKF---------IMKA 725

Query: 611 NHTVEIGGHREQVVA 625
           N  V I G     VA
Sbjct: 726 NGEVIILGKTFNFVA 740