Pairwise Alignments

Query, 256 a.a., nickel ABC transporter ATP-binding subunit from Pseudomonas putida KT2440

Subject, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  160 bits (406), Expect = 2e-44
 Identities = 102/257 (39%), Positives = 143/257 (55%), Gaps = 12/257 (4%)

Query: 3   PSVLEIRGL--RIETQAGVL--VHDVDLQLRRGEVCTLVGASGSGKSLSCLGLLDLL--P 56
           P++L+++ L  R  T AG L  V  +   +  GE   +VG SG GKS++ + LL LL  P
Sbjct: 4   PALLDVKDLTVRFRTPAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLLRSP 63

Query: 57  PGL-----ARTQGQLLLDGQPLAASSVRGRLTSLVLQNPRSAFNPVRNMASHAIETL-RQ 110
           P        R +G  LL     A   VRG   +++ Q+P SA NPVR +A   IE+L R 
Sbjct: 64  PAEISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESLKRH 123

Query: 111 RGITSAVARARMAHCLDAVGLADTERVLQSFAFQLSGGMLQRMMIALALMAETPFLLADE 170
            G+       R    LD V + + +R    +    SGGM QR+MIA+A+ A    L+ADE
Sbjct: 124 TGLRGPALHRRAVELLDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLIADE 183

Query: 171 PTSDLDALSQARFLDLLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQPAH 230
           PT+ LD   QA+ L L++ L +  G+ +LL++HD+GVVA  AD+V VM AGR VE +P  
Sbjct: 184 PTTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEERPVA 243

Query: 231 ELFQRPASATARTLLHA 247
           +LF RP     R L+ A
Sbjct: 244 DLFARPLHPYTRALMRA 260