Pairwise Alignments

Query, 256 a.a., nickel ABC transporter ATP-binding subunit from Pseudomonas putida KT2440

Subject, 338 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  159 bits (402), Expect = 7e-44
 Identities = 103/259 (39%), Positives = 141/259 (54%), Gaps = 13/259 (5%)

Query: 1   MSPSVLEIRGLRIETQAGVLVHDVDLQLRRGEVCTLVGASGSGKSLSCLGLLDLLPPGLA 60
           M+P ++++R L I       V  + L +  GE   LVG SGSGKSL+ L L+ LLP    
Sbjct: 1   MAP-LIDVRDLSIAFPRATPVRGLSLTVEAGETVALVGESGSGKSLTALALMRLLPDTAR 59

Query: 61  RTQGQLLLDG-----------QPLAASSVRGRLTSLVLQNPRSAFNPVRNMASHAIETLR 109
              G++L  G           +  A   VRGR  ++V Q P ++ NPV ++     E +R
Sbjct: 60  IASGEILFRGRDGGVTDLARLEDRALRRVRGRDIAMVFQEPMTSLNPVLSVGQQVAEVVR 119

Query: 110 -QRGITSAVARARMAHCLDAVGLADTERVLQSFAFQLSGGMLQRMMIALALMAETPFLLA 168
              G++   A AR    LD V + +  R +  +  +LSGGM QR+MIA+A+      L+A
Sbjct: 120 LHEGLSRRAAFARAVELLDLVRIPEPRRRVGDYPHELSGGMRQRVMIAIAVACTPRLLIA 179

Query: 169 DEPTSDLDALSQARFLDLLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQP 228
           DEPT+ LD   QA+ LDLL  L +   +G+LL+THD+GVVA  AD+VAVM AGR VE  P
Sbjct: 180 DEPTTALDVTIQAQVLDLLDALRRDLSMGLLLITHDLGVVAEWADRVAVMYAGRKVEDAP 239

Query: 229 AHELFQRPASATARTLLHA 247
              LF  P     R LL A
Sbjct: 240 FETLFGAPLHPYTRGLLAA 258