Pairwise Alignments

Query, 256 a.a., nickel ABC transporter ATP-binding subunit from Pseudomonas putida KT2440

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  152 bits (384), Expect = 2e-41
 Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 12/254 (4%)

Query: 4   SVLEIRGLRIETQAGVLVHDVDLQLRRGEVCTLVGASGSGKS---LSCLGLLDLL----P 56
           ++L + GL +E     +V D+  ++  G    +VG SGSGKS   LS + L D++    P
Sbjct: 8   ALLSVEGLSVEFGDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGATYP 67

Query: 57  PGLARTQGQLLLDGQPLAASSVRGRLTSLVLQNPRSAFNPVRNMASHAIETL---RQRGI 113
            G    +G+ LL        S+RG+  +++ Q P ++ NPV  +     E L    + G 
Sbjct: 68  TGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEKLGK 127

Query: 114 TSAVARARMAHCLDAVGLADTERVLQSFAFQLSGGMLQRMMIALALMAETPFLLADEPTS 173
           T+A+ +A+    LD V L D   +L  +  QLSGGM QR+MIA+AL      L+ADEPT+
Sbjct: 128 TAAMEQAKQL--LDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPTT 185

Query: 174 DLDALSQARFLDLLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQPAHELF 233
            LD   QA+ L+++ +L +  G+G++ +THDMGVVA  AD V VM  G+ VE  P  ++F
Sbjct: 186 ALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDIF 245

Query: 234 QRPASATARTLLHA 247
             P     R LL A
Sbjct: 246 ANPQHPYTRALLSA 259



 Score =  101 bits (251), Expect = 4e-26
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 13/234 (5%)

Query: 21  VHDVDLQLRRGEVCTLVGASGSGKSLSCLGLLDLLPPGLARTQGQLLLDGQPLAASSVRG 80
           V  V   +  GE   LVG SGSGKS     +  L         G++  +G+  +  S   
Sbjct: 331 VQKVSFDIHAGETLALVGESGSGKSTIGRTIQQLQ----TAVSGEIAFNGRSYSQMSAAE 386

Query: 81  RL-----TSLVLQNPRSAFNPVRNMASHAIETLRQRGITS--AVARARMAHCLDAVGLAD 133
           R         + Q+P ++ +P + +     E +   G+ +     R R+   L+ VGL+ 
Sbjct: 387 RFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTHGLINDQKAVRRRVDELLERVGLSS 446

Query: 134 TERVLQSFAFQLSGGMLQRMMIALALMAETPFLLADEPTSDLDALSQARFLDLLMELVQV 193
                  +  + SGG  QR+ IA AL ++   ++ADE  S LD   QA+ ++L M+L   
Sbjct: 447 EHAA--RYPHEFSGGQRQRVCIARALASDPKLIIADEALSALDVSIQAQIINLFMDLQAE 504

Query: 194 HGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQPAHELFQRPASATARTLLHA 247
            GL  L ++HDM VV + + +VAV+  G+I+E     ++F+ P     R LL A
Sbjct: 505 RGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVFETPTHDYTRRLLSA 558