Pairwise Alignments

Query, 313 a.a., nickel ABC transporter permease subunit from Pseudomonas putida KT2440

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  202 bits (514), Expect = 9e-57
 Identities = 122/307 (39%), Positives = 171/307 (55%), Gaps = 15/307 (4%)

Query: 13  VPVMLGASLLVFVLLHLGSTDPALDYLRLSHIPPTDAAIAEVRHTLGLDRPLYAQYLSWL 72
           VP ++G  LL F+L+ L   D A D +       T  ++A++R   GLD P+  Q  ++L
Sbjct: 18  VPTVIGVILLNFILMQLIPGDAA-DVVAAESGSATAESMAQLRTHFGLDLPVIQQLFAYL 76

Query: 73  WNAVHLDFGISYITGRPVLDDLLYYLPATLQLGGLALACTLLLSIPLGLLAARWQGRWPD 132
            N  H   GIS     PV+  +   L  TL L   ALA  L + I  G + A   GRW D
Sbjct: 77  NNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAGTVMATRVGRWQD 136

Query: 133 HAVRAVTFLGVSMPNFWLAFLLIALFSLWLGWLPP-----LGRGGAG---------HLVM 178
             +  +  L  S P FWL  + I LFS+ LGWLP      +G G  G         HLV+
Sbjct: 137 RTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTGWTHVVDVARHLVL 196

Query: 179 PVLAIALMSMSINARLLRASLLDAGGQRHVTYARARGLPERHVWRDHILRNAWLPLVTAT 238
           P LA+A   ++I +RL RA++L+   Q  V  A A+GL    V   HILRNA +P+ T  
Sbjct: 197 PALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRHILRNALIPVTTVA 256

Query: 239 GMHIGELLGGALVIETIFAWPGVGRFAVSAVLNRDFPVMQCFTLLLTGLLMICNLIVDVC 298
           GMH G LLGGA+V+ET+F+WPG+GR A  +V  RD+ V+    L+ + L+++ N++VD+ 
Sbjct: 257 GMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSSLLVIVANMLVDLL 316

Query: 299 YAWLDPR 305
           +AWLDPR
Sbjct: 317 HAWLDPR 323