Pairwise Alignments

Query, 313 a.a., nickel ABC transporter permease subunit from Pseudomonas putida KT2440

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  191 bits (484), Expect = 3e-53
 Identities = 109/324 (33%), Positives = 175/324 (54%), Gaps = 20/324 (6%)

Query: 1   MLRYILLRLALLVPVMLGASLLVFVLLHLGSTDPALDYLRLSHIPPTDAAIAEVRHTLGL 60
           M+ ++L RL   V VM+  + + F+L      DP +  L     P     I E+R  LGL
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYVG-DPVVFLLGQDAKPDQ---IRELRAALGL 56

Query: 61  DRPLYAQYLSWLWNAVHLDFGISYITGRPVLDDLLYYLPATLQLGGLALACTLLLSIPLG 120
           D+P + Q+  +L NA   +FG+S   G  V   +    PATL+L  +A    L + IP+G
Sbjct: 57  DQPFFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMG 116

Query: 121 LLAARWQGRWPDHAVRAVTFLGVSMPNFWLAFLLIALFSLWLGWLPPLGRG--------- 171
           +  A  +G +       V+ LGVS+P F +  LLI +F++ LGW P  GRG         
Sbjct: 117 VYTALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWT 176

Query: 172 -------GAGHLVMPVLAIALMSMSINARLLRASLLDAGGQRHVTYARARGLPERHVWRD 224
                  G  H+V+P + +A+  +++  RL+RA +L+     ++ +ARARGL  R +   
Sbjct: 177 SGLFSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFG 236

Query: 225 HILRNAWLPLVTATGMHIGELLGGALVIETIFAWPGVGRFAVSAVLNRDFPVMQCFTLLL 284
           H L+N  +P++T TG+ +G L+  A++ E++F WPG+G   + AV   D PVM  +  L+
Sbjct: 237 HALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCLI 296

Query: 285 TGLLMICNLIVDVCYAWLDPRSRL 308
             + ++ NL+VD+ Y  +DPR R+
Sbjct: 297 ALIFVVINLVVDLLYFVVDPRLRV 320