Pairwise Alignments

Query, 313 a.a., nickel ABC transporter permease subunit from Pseudomonas putida KT2440

Subject, 339 a.a., dipeptide ABC transporter, membrane subunit (DppB) (from data) from Escherichia coli BW25113

 Score =  206 bits (523), Expect = 8e-58
 Identities = 115/338 (34%), Positives = 183/338 (54%), Gaps = 33/338 (9%)

Query: 1   MLRYILLRLALLVPVMLGASLLVFVLLHLGSTDPALDYLRLSHIPPTDAAIAEVRHTLGL 60
           ML++IL RL L++P  +G +LL F  +H+   DP +       I P   A  ++   LGL
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHA--QLLAELGL 58

Query: 61  DRPLYAQYLSWLWNAVHLDFGISYITGRPVLDDLLYYLPATLQLGGLALACTLLLSIPLG 120
           D+P++ QYL ++W  +H D GIS  +  PV ++ +    ATL+LG  A+     + IP+G
Sbjct: 59  DKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVG 118

Query: 121 LLAARWQGRWPDHAVRAVTFLGVSMPNFWLAFLLIALFSLWLGWLPPLGR---------- 170
           +LAA  +G   DH    +   G SMP FW   +LI L S+     P  GR          
Sbjct: 119 VLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDS 178

Query: 171 ---------------------GGAGHLVMPVLAIALMSMSINARLLRASLLDAGGQRHVT 209
                                    H+++P + +  + +++  R+ R+S+L+  G+ ++ 
Sbjct: 179 NPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIR 238

Query: 210 YARARGLPERHVWRDHILRNAWLPLVTATGMHIGELLGGALVIETIFAWPGVGRFAVSAV 269
            ARA+GL    V   H LRNA LP+VT  G+ +G LL GA++ ETIF+WPG+GR+ + A+
Sbjct: 239 TARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDAL 298

Query: 270 LNRDFPVMQCFTLLLTGLLMICNLIVDVCYAWLDPRSR 307
             RD+PV+Q   LL+  ++++ NL+VD+ Y  ++PR R
Sbjct: 299 QRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336