Pairwise Alignments

Query, 313 a.a., nickel ABC transporter permease subunit from Pseudomonas putida KT2440

Subject, 329 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  212 bits (539), Expect = 1e-59
 Identities = 123/307 (40%), Positives = 173/307 (56%), Gaps = 15/307 (4%)

Query: 13  VPVMLGASLLVFVLLHLGSTDPALDYLRLSHIPPTDAAIAEVRHTLGLDRPLYAQYLSWL 72
           VP +LG  +L F LL L   D A D L       T   +AE+R   GLD P+  Q +++L
Sbjct: 19  VPTVLGIVILNFFLLQLAPGDAA-DVLAAEAGSATVETMAEMRSRFGLDLPIVHQLMNYL 77

Query: 73  WNAVHLDFGISYITGRPVLDDLLYYLPATLQLGGLALACTLLLSIPLGLLAARWQGRWPD 132
            N      G S   G PV D +   LP TL L G AL   + + + LG + A + G+ PD
Sbjct: 78  GNLAQFSLGFSPRYGMPVADLIGQRLPGTLALMGAALGIAIFVGVFLGSIMALFSGKLPD 137

Query: 133 HAVRAVTFLGVSMPNFWLAFLLIALFSLWLGWLPPLGRGGAG--------------HLVM 178
             +   + +  S+P FW+  +LI  FS+ LGWLP  G    G              ++V+
Sbjct: 138 RIISIGSLIFYSVPGFWIGLMLILTFSVKLGWLPSGGDSTIGSSLTGFAAFLDRLRYIVL 197

Query: 179 PVLAIALMSMSINARLLRASLLDAGGQRHVTYARARGLPERHVWRDHILRNAWLPLVTAT 238
           P L++AL  ++I ARL RA++L+   Q +V  ARA+G+    +   HILRNA +P+ T  
Sbjct: 198 PALSLALYFLAIYARLTRAAMLEVKSQDYVRTARAKGVSPFRLITRHILRNALIPITTMA 257

Query: 239 GMHIGELLGGALVIETIFAWPGVGRFAVSAVLNRDFPVMQCFTLLLTGLLMICNLIVDVC 298
           GMHIG LLGGA+V+ET+F+WPG+GR A  AV+ RDF V+    LL + +++I N  VD+ 
Sbjct: 258 GMHIGGLLGGAVVVETVFSWPGLGRLAFEAVMARDFSVLLGILLLSSLVVIIVNAAVDLL 317

Query: 299 YAWLDPR 305
            AWLDPR
Sbjct: 318 QAWLDPR 324