Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1029 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5

 Score =  728 bits (1878), Expect = 0.0
 Identities = 388/1010 (38%), Positives = 603/1010 (59%), Gaps = 5/1010 (0%)

Query: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65
            FNLSA A++ RS+ ++L+ +   AG +AF  LGRAEDP F +K M +   WPGAT +E  
Sbjct: 5    FNLSAWALKHRSVIIYLMAISVVAGVMAFRNLGRAEDPTFVIKTMVVQANWPGATLEETF 64

Query: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
              V E LE+++QE    +  E+YT+PG+    V L+     + V + +Y  RK   D   
Sbjct: 65   RQVTERLERKLQETPQLNFLESYTKPGVTTVFVHLKGSATAAEVPDIWYHVRKSIADIRH 124

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
             +P G++GP  NDEF D    +Y   A G   R+L    E  R +LLHVP V K+ I+G 
Sbjct: 125  TLPQGIVGPFFNDEFGDTFGIIYGFTADGFSHRELRDYVEEARSELLHVPDVSKIEILGA 184

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q ERIF+ FS   LA+LGI  Q + SAL  QN + PSG ++T    + +RV GAF   A 
Sbjct: 185  QDERIFIEFSMQELASLGIDRQAVLSALAAQNIVRPSGEIQTGKENISIRVSGAFASEAD 244

Query: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305
            I    +   GR ++L+D+A + RG+ DP   + R +G+ A+ L I MR+G + L +G  +
Sbjct: 245  IANVNLAVNGRLIRLADIATIRRGFADPPQPMFRVNGKDAIGLAIAMRDGGDILAMGANI 304

Query: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365
            +    +I   MP+G+  + V DQAV + S++ EFM   + A+ ++++V F+++G R G +
Sbjct: 305  DRAMTRILANMPVGIDATLVADQAVTVKSAISEFMESLWQAVGIILVVSFIALGVRAGAI 364

Query: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425
            VA A+PLTLAIVF +M     +  RI+LG+LI+AL L+VDDA+   +  + ++  G D  
Sbjct: 365  VALAIPLTLAIVFALMQLAHIDMQRISLGALIIALALMVDDAMTTTDATLTRLAAGDDPP 424

Query: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485
             A++YA+   AA ML+GTLVT  GF+P GFA S+AGEYT  +F +V IAL+ SW+VAV F
Sbjct: 425  TAASYAFKAYAAAMLAGTLVTVAGFVPVGFAASSAGEYTFTLFAVVAIALLVSWIVAVLF 484

Query: 486  TPYLGVKLL--PRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVL 543
             P L V +L  P    I   +A          +RA L   +  +W+        FV +VL
Sbjct: 485  APLLQVLILRAPAKDKIPDPNAPPKGV--MGMYRAFLILCLRLRWVTLAVTAGLFVLSVL 542

Query: 544  GMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQG 603
             + L+ +QFFP+SDRPE+LV+L  P   SI  + + A   +  L    +    +TY+G+G
Sbjct: 543  ALPLIPRQFFPSSDRPELLVDLASPQNASIYASQSVAEAFDKVLANDPDVARWSTYVGRG 602

Query: 604  PPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGP 663
              RF+L +  +LP+  FA+ V++ ++  ARE L+ +L +  +    P    R++ L  GP
Sbjct: 603  AIRFYLPLDVQLPNDFFAQSVIVAKDVAARERLRVKLEKVLATDF-PQLVARISPLELGP 661

Query: 664  YSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQS 723
               +PV YRV GP+  ++R IA  +  V+  +P ++TVN +W      +   ++QD  + 
Sbjct: 662  PVGWPVQYRVSGPEIEKVRAIAFDLAKVMAENPQVETVNYNWIEPARQVSIRVDQDEARL 721

Query: 724  VGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQR 783
            +GL++A ++  L  +L+G P+T VR+DI  V VV RA  + R+  + +    +    G+ 
Sbjct: 722  LGLSTAQLAGVLNTVLSGQPVTQVRDDIYLVNVVARATDEERVSLSSLATLQVPLPGGRT 781

Query: 784  VPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAG 843
            VP+SQI       + P + RRDR PT+TV+ D+  G+ P  V   +   ++ +   LPAG
Sbjct: 782  VPLSQIATFEYGQDYPAIWRRDRVPTLTVQSDVKRGVLPESVVEKLDPKIEALRRTLPAG 841

Query: 844  YKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVP 903
            Y I   G++EESA +  ++V ++P+M+ L   +++ +++S   +V+V   +PLGLIGVV 
Sbjct: 842  YAITTGGTVEESASSLASVVAVVPVMLLLMFTVLMFELKSFQRLVIVLSVAPLGLIGVVG 901

Query: 904  VLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPV 963
             LLL G+P G  A++G++AL G++ +N +ILIGQI+ ++  G   +DAVV  +  R RP+
Sbjct: 902  ALLLSGRPLGFVAILGVLALIGMITKNAVILIGQIEADRAAGKTVWDAVVSGSSMRFRPI 961

Query: 964  LLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWF 1013
            +LTA++ +L  IP+  +VFWG +A+ ++GG  VGT++TL+FLPA+Y  WF
Sbjct: 962  MLTAVSTVLGMIPIAPTVFWGPMAFAIMGGLLVGTLLTLIFLPALYVAWF 1011