Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  761 bits (1964), Expect = 0.0
 Identities = 407/1029 (39%), Positives = 637/1029 (61%), Gaps = 19/1029 (1%)

Query: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65
            FNLS  A+    +T +L+V++   G  A+F+LG+ EDPPFT + M + T WPGATAQ++ 
Sbjct: 15   FNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVA 74

Query: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
            + V + LE+ +QE  + D+  +Y++PG +  + +++D +  + V   +Y  RKK GD   
Sbjct: 75   EQVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIGDMRA 134

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
             +PAGV GP  ND+F DV   +YAL+++G    +L   A+ +RQQLL V  V KV+  G 
Sbjct: 135  TLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGV 194

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q E++++  S  RLA LG+    +   L +QNA+  +GS+ +    V VRV G F  + +
Sbjct: 195  QDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQ 254

Query: 246  IRETPV-VAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304
            +R+ P+  + G  +KL D+AD+ RGY DP    V + G+  + LG+ M +G + + LGKA
Sbjct: 255  LRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKA 314

Query: 305  LEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSM------ 358
            L+A TA I++ +P G+ L++V DQ V++ SSV+EF+     A+ +V+ V  +S+      
Sbjct: 315  LKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGG 374

Query: 359  --GW----RVGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIE 412
              GW    R G+VVA  +PL LA+ F+ M   G    +I+LGSLI+ALGLLVDDAIIA+E
Sbjct: 375  RFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE 434

Query: 413  MMVVKMEEGYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVG 472
            MMV KMEEGYD+ +A+ YA+  TA PML+GTL+TA GF+P G A+S  GEYT  +F +  
Sbjct: 435  MMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTV 494

Query: 473  IALIASWVVAVAFTPYLGVKLLP-RIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVA 531
            IAL+ SW+V+V F PYLG  LL  +    +     ++++  YN FR  + W + H+W   
Sbjct: 495  IALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFRRAVNWCVEHRWATI 554

Query: 532  GTVVSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQE 591
            G  V  F   ++GMG V++QFFP S RPE+LV++  P GTS       A +VE    ++ 
Sbjct: 555  GATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEKRFMEEA 614

Query: 592  EAKIVTTYIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPG 651
                V+T+IG G PRF+L +    P  + ++++VL ++   RE L+ +L +  ++   P 
Sbjct: 615  GVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQEF-PE 673

Query: 652  AQVRVTQLVFGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPT 711
             + RV  L  GP   YPV +RV+GPD + LR  A  V++VL+ +P M+ VN +W   V  
Sbjct: 674  VRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWNESVKV 733

Query: 712  LHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQI 771
            +   ++Q + +++G+TS +++Q  + + +G  +   RE+   + +V R A   R   + I
Sbjct: 734  IRLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQAISDI 793

Query: 772  ENFTLVGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWK 831
             N  +  S+G+ +P++QI       E  ++ R +R   +TV+GD+ EGLQ   V+T +  
Sbjct: 794  GNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIEGLQGATVTTQLLP 853

Query: 832  DLQPIVTQLPA----GYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAM 887
             L+ +     A    GY++E+AG+ EES+K S +IV  +PIM+ L   +++LQ+ S S  
Sbjct: 854  KLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLHSFSRS 913

Query: 888  VMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLA 947
            ++VF+T P+G+ GV   LL+  +PFG  AL+G+IAL G++ RN +ILI QI+ ++  G+ 
Sbjct: 914  LLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDRAAGVP 973

Query: 948  PFDAVVEATVQRARPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPA 1007
             +DA+VE+ V+R RP++LTA AA+LA IPL+ SVFWG +A  ++GG  V T++TL+ LPA
Sbjct: 974  AWDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTLLALPA 1033

Query: 1008 MYSIWFKIR 1016
            MY+  F+++
Sbjct: 1034 MYAAAFRVK 1042