Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1031 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

 Score =  699 bits (1805), Expect = 0.0
 Identities = 405/1024 (39%), Positives = 607/1024 (59%), Gaps = 9/1024 (0%)

Query: 7    NLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQD 66
            NLS  A+  + +  FL+VL A AG  ++  LGR EDP FTVK M I   WPGATAQ+M  
Sbjct: 9    NLSRWALTHQQMVGFLLVLAAVAGLFSYMALGRKEDPEFTVKTMMITVGWPGATAQQMSQ 68

Query: 67   LVAEPLEKRMQE-LRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
             V +P+E  + E +   D  ++  RPG A   V+L      SAV + +Y+ RK   D   
Sbjct: 69   QVIKPIETVLTENIAEIDYVKSKARPGQATLNVTLISTVKSSAVPDIWYRIRKTVTDNRA 128

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
             +P GV+GP  NDEF      +YA+   G     L R AETLR ++  +P V K  IIG 
Sbjct: 129  DLPNGVVGPAFNDEFGTTYGNIYAVTGDGFSYPVLKRYAETLRDRIQALPDVAKTQIIGA 188

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q E I+V++   RLA  GI+ Q I  ALD  NA++ SG VE    +V ++V G F  +  
Sbjct: 189  QDEAIYVTYDSARLAMSGISAQAIADALDTTNAVAASGIVEAGAERVRMQVTGDFASVEA 248

Query: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305
            I  TP+VA G+ ++L  +A VER    PATF +R   + A+ +GI +R   +   LG+ L
Sbjct: 249  IAATPIVANGKSVRLDAIAKVERKPVHPATFRMRFGAKDAVGVGISLRSDGDVARLGEDL 308

Query: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365
            +   A +   MP+G+ +  V+DQ   +  SV EF      A+++V+ V FLS+GWR G+V
Sbjct: 309  KHTIAALQSEMPVGVDIHTVSDQTRVVDESVGEFTTSLIEAIVIVLAVNFLSLGWRPGIV 368

Query: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425
            VA  +PL LA+ FV M   G +  RI+LG+LI+ALGLLVDDAII +E +   +E G+ R 
Sbjct: 369  VALCIPLVLAMTFVCMLYVGIDLQRISLGALIIALGLLVDDAIIVVEAVATHLEAGWTRT 428

Query: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485
            +A+  A+S TA PML GTL+T  GF+P   +++TA EY  ++F ++ I+LI SWVVAV F
Sbjct: 429  RAAVSAYSVTAVPMLVGTLITVAGFLPIAMSKATASEYVISLFQVIAISLILSWVVAVIF 488

Query: 486  TPYLGVKLLPR---IKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAV 542
            TP++   LLP+    +   G     Y  R Y  FR +L   +  +  V    ++ FV ++
Sbjct: 489  TPFIAYHLLPQRADARDDAGEPEEQYEGRFYGWFRRMLDRCLDRRKTVVAVALAMFVGSM 548

Query: 543  LGMGL-VKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIG 601
            L   + V +QFFP SDRPE++V+LQ+    S  QT A A ++E  L + +     T Y+G
Sbjct: 549  LLFQIGVPRQFFPASDRPELVVDLQLSQNASFAQTQAVAARMEQLLARDDRVVSTTAYLG 608

Query: 602  QGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVF 661
             G PRF+L +  + PD + A++V+ T ++ ARE +   ++   +    P A+ RV++L  
Sbjct: 609  GGSPRFYLPLNVQTPDITLAELVLQTRDEEAREGVIASIQSLFATHF-PEARGRVSRLEN 667

Query: 662  GPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRL 721
            GP    PV YRV GPD +Q+  +A R++ +++A    + VN+D G  +  +   L+QD++
Sbjct: 668  GPSVGQPVQYRVAGPDLTQIMPVAKRLEELIRADSHARDVNSDLGEPLKAIRVDLDQDKV 727

Query: 722  QSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNG 781
            +++GL++ +V Q LQ  + G   TS R+   +++VV R +   R D  +I N  +   NG
Sbjct: 728  RALGLSTQAVQQSLQAAIGGAGTTSFRDRDLALEVVLRLSAAERTDLGRIANLPISTPNG 787

Query: 782  QRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLP 841
              VP++Q+G VS   E  ++ +R+R PT+T+  D+ EG Q  D++  I   ++ +   LP
Sbjct: 788  -AVPLAQLGHVSAGSEPAVIYQRNRQPTITISADV-EGEQASDLTKRIEPQIEALRRDLP 845

Query: 842  AGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGV 901
            +G  I   GS E+S+   +A +  +P  I + +++++LQ++++  M++V  T PL LIGV
Sbjct: 846  SGASIVKGGSEEQSSINQKATMAAVPFAIFVIVILLMLQLQNVKRMLVVLATGPLALIGV 905

Query: 902  VPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRAR 961
              ++ LF  PFG  A++G +AL G+++RN++ILI QID     GLA  +AV EA V R R
Sbjct: 906  ALIMALFRIPFGFVAMLGSLALFGMVLRNSVILIAQIDTLSGHGLAMREAVREAAVHRLR 965

Query: 962  PVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSRI 1021
            P+LLTALAAILA IPLT S FWG +A+ ++GG  V TI+TL+ LPA+Y + F  RP  R 
Sbjct: 966  PILLTALAAILAMIPLTRSTFWGPMAWAIMGGLMVATILTLIVLPALYELVFD-RPQHRA 1024

Query: 1022 AKPE 1025
               E
Sbjct: 1025 DSQE 1028