Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  733 bits (1891), Expect = 0.0
 Identities = 396/1014 (39%), Positives = 612/1014 (60%), Gaps = 10/1014 (0%)

Query: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65
            FNLS  A++ +S   +L+ +    G  ++F LGR EDP FT+K M I T WPGAT  E  
Sbjct: 5    FNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETL 64

Query: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
              V + +EK+++EL   D T++YTRPG +   V L+D T    + + +YQ RKK  D   
Sbjct: 65   YQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRG 124

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
              PAG+ GP  NDEF DV  ++YA  A G   RQL    E  R ++  VP + K+ ++G 
Sbjct: 125  EFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGT 184

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q E ++++FS  +LA LGI  + +  AL  QNA++P+G +E    ++ VR  G F     
Sbjct: 185  QDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKD 244

Query: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305
            ++   +    R  +L+D+AD+ERGY DP + + R +G+ A+ L I M+ G N    G AL
Sbjct: 245  LQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGAAL 304

Query: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365
            +    ++ + +P+G+ +  V+DQAV +  +V  F    F A+++V+ V F+S+G R G+V
Sbjct: 305  KKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAGLV 364

Query: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425
            VA ++PL LA+VFV M  +G    RI+LG+LI+ALGLLVDDA+I +E+MV ++E G  + 
Sbjct: 365  VACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESKE 424

Query: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485
            +A+ +A++ TA PML+GTLVT  GF+P G   S+AGEYT  +F ++ +ALI SWVVAV F
Sbjct: 425  QAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVFF 484

Query: 486  TPYLGVKLL--PRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWL-VAGTVVSTFVAAV 542
             P LGV +L   ++K  E     +        F   L W + ++WL + GTVV  F  A+
Sbjct: 485  APVLGVHILKGDKLKAHEAEPGRVGRA-----FEGGLLWCMRNRWLTIIGTVV-LFALAI 538

Query: 543  LGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQ 602
              M  V+ QFFP+SDRPE+LV+L +P   SIE+T     + E+ ++   +    +TYIGQ
Sbjct: 539  FCMRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIGQ 598

Query: 603  GPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFG 662
            G  RF+L +  +L +P +A++V++++    R+A+  RL++   E    G    V  L  G
Sbjct: 599  GAIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFV-GVGTNVQSLEMG 657

Query: 663  PYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQ 722
            P    P+ YRV G D  Q+R+ A  + ++L  +  +  +  DW      L   + QD+ +
Sbjct: 658  PPVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKAR 717

Query: 723  SVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQ 782
             +GL+S  V+  +  +++GV IT V ++I  V VV RA    R  P  ++N  ++  NG 
Sbjct: 718  QLGLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGT 777

Query: 783  RVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPA 842
             +P+     V   +E P++ RRDR PT+T++  +   +QP D+   +   +    ++LP 
Sbjct: 778  SIPLLSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLPV 837

Query: 843  GYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVV 902
            G+++   G++EESAKA   I  ++P+M+ L    +++Q+ S+  + +V   +PLGLIGVV
Sbjct: 838  GFEVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVV 897

Query: 903  PVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARP 962
              L+  G P G  A++G++AL+GI++RN++IL+ QID  + +GL+P+DAVVEAT  R RP
Sbjct: 898  LALVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRP 957

Query: 963  VLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIR 1016
            +LLTA AA L  IP+   VFWG +AY +IGG  V T++TL+FLPA+Y  W+KIR
Sbjct: 958  ILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIR 1011