Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1021 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  781 bits (2016), Expect = 0.0
 Identities = 419/1018 (41%), Positives = 635/1018 (62%), Gaps = 8/1018 (0%)

Query: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65
            FNLSA A+R R I LFL++L+A  G +++ KLG++EDPPFT K M I T WPGA+A+E+ 
Sbjct: 3    FNLSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGASAEEVA 62

Query: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
              V E +EK++ E   Y+R  +++RPG +      +D      + E +YQ RKK  D   
Sbjct: 63   RQVTERIEKKLMETGEYERIVSFSRPGESQVTFMARDSLHSKDIPELWYQIRKKVADIRH 122

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
             +P  + GP  NDEF      +YAL  +G     L   A+ ++ QL  V  V KV++IG 
Sbjct: 123  TLPPEIQGPFFNDEFGTTFGNIYALTGEGFDYAVLKDYADRIQIQLQRVKDVGKVDLIGL 182

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q E++++  S+ +LATLG+  + +  AL  QNA+S +G  ET   ++ +RV G FD + +
Sbjct: 183  QDEKVWIELSNLKLATLGVPLEAVQKALQEQNAVSTAGFFETPSERLQLRVSGRFDSVEQ 242

Query: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305
            IR+ P+    R  ++ DVA+V RG+ DP    +R  GE A+ L + M++G + L LGKAL
Sbjct: 243  IRQFPIRVGDRTFRIGDVAEVHRGFNDPPAPRMRFMGEDAIGLAVSMKDGGDILVLGKAL 302

Query: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365
            E E  ++   +P GM L KV+DQ   + + V EF+     AL++V+LV F S+G R G+V
Sbjct: 303  EGEFERLAHNLPAGMALRKVSDQPAAVKAGVGEFVQVLVEALVIVLLVSFFSLGLRTGLV 362

Query: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425
            VA A+PL LA+ F  M   G    +I+LG+L+LALGLLVDDAIIA+EMM +KME+GYDR+
Sbjct: 363  VALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRL 422

Query: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485
            KA++YAW+ TA PML+GTL+TA GF+P   A S+ GEYT ++F +V IAL+ SWV AV F
Sbjct: 423  KAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVTIALLTSWVAAVVF 482

Query: 486  TPYLGVKLLPRIKTI------EGGHAA-IYNTRHYNRFRALLGWVIAHKWLVAGTVVSTF 538
             PYLG +LLP +  +      + GHA   Y T  Y R R L+ W +  +  V    ++ F
Sbjct: 483  VPYLGERLLPDLAKLHAARHGKDGHAPDPYATPFYQRVRRLVEWCVRRRKTVILLTIAAF 542

Query: 539  VAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTT 598
            V ++L    V +QFFP S RPE++V+L++  G S+  T     ++E+ L+QQ+       
Sbjct: 543  VGSILLFRFVPQQFFPASGRPELMVDLKLAEGASLANTAERVKQLEALLKQQDGIDNYVA 602

Query: 599  YIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQ 658
            Y+G G PRF+L +  +LP  SFA+ VVL ++   RE L+  L     +   P  + RVT+
Sbjct: 603  YVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDRERLRSWLISTVDQQF-PDLRARVTR 661

Query: 659  LVFGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQ 718
            L  GP   YPV +RV G    + R +A  V   ++ +P +  V+ DW      +   ++Q
Sbjct: 662  LENGPPVGYPVQFRVTGEHIEKARALAREVADKVRENPHVVNVHLDWEEPSKAVFLEIDQ 721

Query: 719  DRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVG 778
            DR +++G++++ ++  LQ  L G  ++  RED   ++++ R   Q R + A + +  L  
Sbjct: 722  DRARALGVSTSHLASFLQSSLIGTTVSQYREDNELIEILLRGTLQERSELANLGSLALPT 781

Query: 779  SNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVT 838
             NGQ V +SQ+  +    E+ I+  R+R PT+TVR DI +  QP  +   I   LQ I  
Sbjct: 782  DNGQSVALSQVATLEYGFEEGIIWHRNRLPTVTVRADIYDQEQPATLVKQILPTLQEIRA 841

Query: 839  QLPAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGL 898
            +LP GY +E+ G++E+S +  +++   +P+ I + L ++++Q+RS S  VMVFLT+PLGL
Sbjct: 842  KLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLSLLMIQLRSFSRTVMVFLTAPLGL 901

Query: 899  IGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQ 958
            IGV   LL+F QPFG  A++G IAL+G++MRN++IL+ QI+ +   G+  + A++EATV+
Sbjct: 902  IGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILVDQIEQDIAAGMERWQAIIEATVR 961

Query: 959  RARPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIR 1016
            R RP++LTALAA+LA IPL+ SVF+G +A  ++GG  V T++TL+FLPA+Y+ WF+++
Sbjct: 962  RFRPIVLTALAAVLAMIPLSRSVFYGPMAVAIMGGLIVATVLTLLFLPALYAAWFRVK 1019