Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1053 a.a., cation efflux system protein from Pseudomonas putida KT2440

 Score =  285 bits (728), Expect = 2e-80
 Identities = 260/1049 (24%), Positives = 481/1049 (45%), Gaps = 72/1049 (6%)

Query: 12   AVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDLVAEP 71
            A+ +R + +  ++++A  G  ++ KL     P  T  Q+ I TA PG +  E +  +  P
Sbjct: 9    AIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRITFP 68

Query: 72   LEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKLMPAGV 131
            +E  M  L    +T + +R GL+   V  +D T     ++   +  + A +Q       V
Sbjct: 69   VETAMAGLPGLQQTRSLSRSGLSQVTVIFKDGTDIFFARQLINERLQVAKEQLPEGVEAV 128

Query: 132  IGPMLNDEFSDVTFAVYA----LKAKGEPQR----QLVRDAETLRQQLLHVPGVKKVNII 183
            +GP+         + V A    +K  G P      ++++D   ++ QL +VPGV ++N I
Sbjct: 129  MGPVSTGLGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDW-IIKPQLRNVPGVAEINTI 187

Query: 184  GEQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQL 243
            G  A++  V+    RLAT  +T  D+ +AL++ NA   +G +E  G Q+++R  G    +
Sbjct: 188  GGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYIERNGEQLLIRAPGQVGNI 247

Query: 244  AKIRETPVVA-QGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLG 302
              I    + +  G P+++S VADV  G E   T     +G   +L  + M  G N   + 
Sbjct: 248  EDIANIVITSVDGAPIRISSVADVSIGKE-LRTGAATENGREVVLGTVFMLIGENSRTVS 306

Query: 303  KALEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMG-WR 361
            +A+ A+ A IN  +P G+    V D+   +  ++           ++V+ + FL +G  R
Sbjct: 307  QAVAAKLADINRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIAILFLFLGNIR 366

Query: 362  VGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEG 421
              ++ A  +PL++   F  M     + + ++LG+L    G++VD A++ +E  + ++   
Sbjct: 367  AALITAMVIPLSMLFTFTGMFNNKVSANLMSLGAL--DFGIIVDGAVVIVENAIRRLAHA 424

Query: 422  Y----------DRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIV 471
                       +R      A      P++ G L+  + ++P        G+    M + V
Sbjct: 425  QHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEGKMFHPMAFTV 484

Query: 472  GIALIASWVVAVAFTPY-LGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLV 530
             +AL+ + V++V F P  + + +  ++K  EG    +  T    R+  +L WV+ H+ + 
Sbjct: 485  VMALLGAMVLSVTFVPAAIAMFVTGKVKEEEG---VVMRTARL-RYEPVLQWVLGHRNIA 540

Query: 531  AGTVVSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVE-SWLRQ 589
                V+  V + L    +  +F P+    +  ++     GTS+ Q+     ++E + + Q
Sbjct: 541  FSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSLTQSVEMQQRLEKAVIAQ 600

Query: 590  QEEAKIVTTYIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGA-----REALKHRLREAA 644
              E + +    G       +A  P  P+ S A I++  ++Q       R+ L   +++AA
Sbjct: 601  VPEVERMFARSGTAE----IASDPMPPNASDAYIMLKPQDQWPNPKKPRDELIAEVQKAA 656

Query: 645  SEGLAPGA--------QVRVTQLVFGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASP 696
            +    PG+        Q+R  +L+ G  S   VA +V G D   L   A ++ + L+A P
Sbjct: 657  AG--VPGSNYELSQPIQLRFNELISGVRSD--VAVKVFGDDMDVLNNTANKIAAALKAVP 712

Query: 697  MMKTVNTDWGPLVPTLHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQV 756
                V  +    +P L  ++++++    GL  A V   +   + G    ++ E  R   +
Sbjct: 713  GSSEVKVEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQAGTLYEGDRRFDM 772

Query: 757  VGRAAGQIRLDPAQIENFTL-VGSNGQR-------VPVSQIGDVSIRMEDPILRRRDRTP 808
            V R    +R D A + +  + V +N  +       +P+SQ+ ++ +++    + R +   
Sbjct: 773  VVRLPETVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVANLDLQLGPNQISRENGKR 832

Query: 809  TMTVRGDIAE---GLQPPDVSTAIWKDLQPIVTQLPAGYKIEMAGSIEESAKASQAIVPL 865
             + V  ++     G    + + ++ K +Q     +PAGY     G  E+   A++ +  +
Sbjct: 833  LVIVSANVRGRDLGSFVEEATASLDKKVQ-----IPAGYWTTWGGQFEQLQSAAKRLQIV 887

Query: 866  LPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSG 925
            +P+ + L + ++ L   ++   ++VF   P  L G V  L L   P  I+A VG IALSG
Sbjct: 888  VPVALLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAGVGFIALSG 947

Query: 926  ILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVLLTALAAILAFIPLTHSVFWGT 985
            + + N L++I  I   + EG     AV E  + R RPVL+TAL A L FIP+  +   G 
Sbjct: 948  VAVLNGLVMIAFIRGLREEGRTLRQAVDEGALTRLRPVLMTALVASLGFIPMALATGTGA 1007

Query: 986  -----LAYTLIGGTFVGTIMTLVFLPAMY 1009
                 LA  +IGG    T +TL+ LPA+Y
Sbjct: 1008 EVQRPLATVVIGGILSSTALTLLVLPALY 1036