Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1016 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  721 bits (1861), Expect = 0.0
 Identities = 388/1012 (38%), Positives = 605/1012 (59%), Gaps = 6/1012 (0%)

Query: 5    RFNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEM 64
            +FNLS  A+  RS+  + I++ A  G  ++ +LGR EDP FT+K M I   WPGATA+EM
Sbjct: 3    KFNLSDWALEHRSLVWYFIIISAVIGFFSYQELGREEDPAFTIKTMVIQAQWPGATAEEM 62

Query: 65   QDLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQA 124
             + V + +EK++QE+   D T + T  G     V L++ TP   V+  + + R    D  
Sbjct: 63   TNQVTDRIEKKLQEIDTLDHTRSQTTAGQTIIFVDLKEDTPSKEVRAVWQRVRNMMADIQ 122

Query: 125  KLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIG 184
               P G+ GP LND F DV   +YA    G  QRQL      +++++L +P V +V I+G
Sbjct: 123  GNFPVGIQGPFLNDRFDDVFGNIYAFTRDGISQRQLRDYVNDVQKKVLTIPNVGRVEILG 182

Query: 185  EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244
             Q E I++ F+  + A LG++  D+ +AL  QNA++ SG +E    ++ +RVDG F    
Sbjct: 183  AQDEVIYLEFNPRKSAELGVSRSDVIAALQAQNAVTASGFMEAGSDRIALRVDGGFASEQ 242

Query: 245  KIRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304
             +R   +    R   L+DV ++ RGY DP T L R DG+PA+ L + ++ G N L  G A
Sbjct: 243  SLRHINLRINNRFFPLTDVVNITRGYVDPPTSLFRYDGKPAIALAVGIKSGSNLLVFGHA 302

Query: 305  LEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGV 364
            L+     I   +P G+++SKV+DQ   +  +V  F    F A+++V+ + F+S+G R G+
Sbjct: 303  LDRTIDHIMHDLPAGVSVSKVSDQPAIVDEAVSGFTRALFEAVVIVLAISFISLGVRAGL 362

Query: 365  VVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDR 424
            VVA ++PL LAI F+VM  +G +  RI+LG+LI+ALGLLVDDA+IA EMMV ++E G   
Sbjct: 363  VVAISIPLVLAITFLVMYYSGISLQRISLGALIIALGLLVDDAMIATEMMVARLEMGDSL 422

Query: 425  IKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVA 484
             KA+ + ++ TA PML+GTLVT   F+P GF  S AGE+   +F ++ ++LI SWVVAV 
Sbjct: 423  RKAATHVYTSTAFPMLTGTLVTVASFIPVGFNASNAGEFLFTLFVVIAVSLIVSWVVAVL 482

Query: 485  FTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544
              P LGV LLP+  T +  H     +R  + F  +L + + H+WL  G+  + F+ +VL 
Sbjct: 483  IAPLLGVALLPKTITKQAEH----QSRTDHAFSRMLQYCLRHRWLTIGSACAAFIVSVLC 538

Query: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVE-SWLRQQEEAKIVTTYIGQG 603
            M LV+ QFFP+SDRPE++V+  +P   SIE+T+    + E   L+   +    ++YIG G
Sbjct: 539  MSLVQHQFFPSSDRPELIVDWNLPQNGSIEETSRQMAQFEQEKLQNNPDVDHWSSYIGTG 598

Query: 604  PPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGP 663
             PRF L+   +    S  ++V++ ++   R+ L+   R   +    PG    V  L  GP
Sbjct: 599  APRFILSFDVQPSSVSLGQMVIVAKDIKTRDRLQKEYRAYLAHTF-PGTDAYVKLLDVGP 657

Query: 664  YSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQS 723
                PV YRV GPD   +R  A ++ +V+  +P +  +  DW      +  ++ QD+ + 
Sbjct: 658  PVGKPVQYRVAGPDIQTVRTEAHKLAAVIGQNPSLTNLAFDWNEPARVVKVNVLQDKARQ 717

Query: 724  VGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQR 783
            +G++S +++Q L  L  G  +T VR+DI  + V+ R   + R     + +  L G+NG++
Sbjct: 718  MGVSSQAIAQALNGLTGGEVVTQVRDDIYLINVLWRGQAKDRGSVDALLDLQLDGNNGRQ 777

Query: 784  VPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAG 843
            VP+S +   S ++E P + RRDR   +T++  ++  +QP  +  A+  +++ +   LP G
Sbjct: 778  VPLSSVATFSYQLEQPTIWRRDRAAAITLKAGVSGDIQPATIVQALEPNVEVLRQSLPQG 837

Query: 844  YKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVP 903
            Y IE  G++EESAKA   IV ++P+M+ +   I+++Q++S   + +VF  +PL LIGVV 
Sbjct: 838  YTIETGGAVEESAKAQAPIVKVVPVMLFVIATILMIQLQSFHRLFLVFSVAPLALIGVVA 897

Query: 904  VLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPV 963
             LLL   P G  A++G++AL GIL+RN++IL+  ID  + EG++P+ AVV+AT  R RP+
Sbjct: 898  ALLLSHAPLGFVAILGVLALVGILIRNSVILVVHIDTLRAEGISPWQAVVQATEHRMRPI 957

Query: 964  LLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKI 1015
            +LTA AA LA IP+   +FWG +AY ++GG  VGT++TL+FLPA+Y  WF I
Sbjct: 958  MLTAAAATLALIPIAREIFWGPMAYAMMGGIIVGTVLTLLFLPALYVTWFNI 1009