Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  701 bits (1809), Expect = 0.0
 Identities = 389/1007 (38%), Positives = 603/1007 (59%), Gaps = 5/1007 (0%)

Query: 5    RFNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEM 64
            ++NLSA A+  + +  F +++I  AG +++ +L R EDP FT+K   +  +WPGAT Q+ 
Sbjct: 8    QWNLSAWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDT 67

Query: 65   QDLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQA 124
               V + LEK++QE  + D  E+Y+RPG A   V+L+D TPPS VQ  +Y  RKK  D A
Sbjct: 68   VSFVTDVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIA 127

Query: 125  KLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIG 184
              +P GV  P +NDEF D    +Y   A G   R+L    + +R +LL  P V K++++G
Sbjct: 128  PSLPDGVGEPAVNDEFDDTFGTIYGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLG 187

Query: 185  EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244
             Q E+I  +FS  +LA +G+  Q + +AL  QNA+SP+G++ T   +V +RV GAF    
Sbjct: 188  VQDEQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEE 247

Query: 245  KIRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304
             +R+  +   GR + L+D+A V R   +P     R +G+PA+ L + M    N LD G+A
Sbjct: 248  SLRQVTLHIGGRFIPLTDIATVYRQAAEPPAPAFRVNGQPAIGLAVSMAPTGNMLDFGQA 307

Query: 305  LEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGV 364
            L ++ A I   +P G+ +  V DQ+  + SSV+ F+     A+++V+ V F+S+G R G+
Sbjct: 308  LRSKMATIGASLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGSRAGL 367

Query: 365  VVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDR 424
            VVAA++P+ L + F  M   G    RI+LG+LI+ALGLLVDDA+I +E MV  +E+G  R
Sbjct: 368  VVAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKGEAR 427

Query: 425  IKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVA 484
             +A+  A+  TA PML+GTLV   GF+P GFA S+AGEY  ++F +V I+L++SW VAV 
Sbjct: 428  EQAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWAVAVL 487

Query: 485  FTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544
            F+P +GV LLP+       HA    +R Y+R   LL   + ++       V+    AV+ 
Sbjct: 488  FSPLIGVWLLPKAMNAHDHHAGRL-SRAYDR---LLSTALRYRGRTLLLSVALLALAVVA 543

Query: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQGP 604
             G ++ +FFP SDRPE+LV L +P   S + T    +++E  L+   +    +TY+G G 
Sbjct: 544  AGRLEGEFFPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDPDLDHFSTYVGSGA 603

Query: 605  PRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGPY 664
             RF+L M   L + + A++VV+ +    R+AL+ RL +   +  +     RV+ L  GP 
Sbjct: 604  VRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFS-HLVTRVSPLELGPP 662

Query: 665  SPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQSV 724
              +P+ YRV GPD  ++R+ AA + +++  +P  + VN   G     +   LNQ   ++V
Sbjct: 663  VGWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLNQTEARAV 722

Query: 725  GLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQRV 784
            G++S  V+  L  + +G  +TSVR+  R V VV RA  + R +   + +  L  +NGQRV
Sbjct: 723  GISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQLRAANGQRV 782

Query: 785  PVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAGY 844
            P+ QI  V   +++PI+ RR R P +TV+ D+A G++   +ST +   +      LPAGY
Sbjct: 783  PLGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQAALPAGY 842

Query: 845  KIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPV 904
             IE  GS  ES K + ++  +LP+ + + L+++++Q++  S M++  L +P GLIGVV  
Sbjct: 843  HIEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFGLIGVVAA 902

Query: 905  LLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVL 964
            +L  G P G  AL+G+IAL+G+++RN +ILI ++D N   G+   +A++ A   R+RP+L
Sbjct: 903  MLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAARHRSRPIL 962

Query: 965  LTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSI 1011
            LTALAAIL  IP+   VFWG +AY +IGG  V T++TL  LPA  S+
Sbjct: 963  LTALAAILGMIPIATQVFWGPMAYAIIGGLIVATLLTLTVLPAAVSL 1009