Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1052 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  741 bits (1913), Expect = 0.0
 Identities = 387/1016 (38%), Positives = 618/1016 (60%), Gaps = 2/1016 (0%)

Query: 5    RFNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEM 64
            +FNLS  A+   SI  FL  LI   G L    +G+ EDP FT + M + + WPGA+  +M
Sbjct: 15   KFNLSRWAISHPSIARFLFGLIIVMGALGVINMGQKEDPDFTFRVMVVQSVWPGASIDDM 74

Query: 65   QDLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQA 124
            Q+ V   +E+++QE    D  ++Y R G+A T + ++  T  + V + FYQ RKK GD  
Sbjct: 75   QNQVVNKIERKLQETPHLDWVKSYIRAGVAITTIQIKGDTNGADVADAFYQVRKKVGDIK 134

Query: 125  KLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIG 184
            + +P+G++GP  NDEF D    ++A+   G    +L + A   R  L+ +PGV+K  I+G
Sbjct: 135  QDLPSGLLGPYFNDEFGDTYITLHAISGDGYSYPELKKFAIQARDMLIAMPGVEKAVILG 194

Query: 185  EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244
            +Q ++IF+  S   LA  G+T  DI +AL  QN + P+GSVET    V + V+G     A
Sbjct: 195  DQPQKIFIDVSSKALAERGLTVVDIQNALQGQNDVDPAGSVETADRSVRISVEGDVTTPA 254

Query: 245  KIRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304
            +IRE  + A  + ++L D+A V  G EDP     R +G   + LG+VM +G+   D+GK 
Sbjct: 255  EIRELRLKAGDQVIRLGDIATVRDGLEDPFQRKFRVNGHDTVELGVVMAKGFKVTDVGKG 314

Query: 305  LEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGV 364
            +E    +  + +P+G+ ++++++Q   +T +V EF      AL +V++V  +S+GWR G+
Sbjct: 315  IEETYKRFEDTLPVGVEVTQISNQPEVVTEAVGEFTQALMEALGIVLIVSLISIGWRSGI 374

Query: 365  VVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDR 424
            V+A A+PL LA    +M   G    RI+LG+LI+ALGLLVDDA+I +EMM  K+EEG +R
Sbjct: 375  VIAVAIPLVLAATLAIMFYMGIELQRISLGALIIALGLLVDDAMIVVEMMERKLEEGLNR 434

Query: 425  IKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVA 484
            + A+++A+S TA PML+GTL+T  GF+P GFA STAGEY  ++F++VGIAL+ SW VAV 
Sbjct: 435  LDAASFAYSSTAFPMLTGTLITTAGFIPVGFAASTAGEYVRSLFFVVGIALVTSWFVAVY 494

Query: 485  FTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544
            FTP+LG  +L + +   G H   Y+TR Y      +GW + HK +V    +  FV ++  
Sbjct: 495  FTPWLGYMILKQ-RAHAGTHHDAYDTRFYRGVGHTVGWAVRHKAIVLLLTLGAFVGSLWS 553

Query: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQGP 604
               + + FFP S RPE+LV++ +P GT+I++    A  +E+ +    + K V T+IG+G 
Sbjct: 554  FQFIPQSFFPQSSRPEILVDMWLPEGTAIKEVERQAKALEAKIMDDPDKKFVATFIGEGA 613

Query: 605  PRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGPY 664
            PRFFL +  +L +P++A+++V++     RE +  +LR+  +E   P  + +V +L  GP 
Sbjct: 614  PRFFLPLDQQLRNPNYAQLLVMSNGLEERERMIVKLRKILAEDF-PTVRGKVDRLFLGPP 672

Query: 665  SPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQSV 724
              + V  RV+GPD +++R IA +V+   +  P    V+ DW   VP +   ++QDR +++
Sbjct: 673  VGWAVQMRVVGPDRAEVRSIADQVKQRFEQQPNFGAVHDDWMEPVPAMKLVIDQDRARAL 732

Query: 725  GLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQRV 784
            G++S  V Q LQ    G  I+  R+   +V +V R     R   + + +  +    G  V
Sbjct: 733  GVSSQRVRQILQAATNGAAISDFRDGEETVSIVVREPDATRSLLSAVNSVYIPTDIGGFV 792

Query: 785  PVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAGY 844
            P SQI  V   +E  I  RRDR PT+TV+  + +G++P  V+  ++  +  +  +LPAGY
Sbjct: 793  PASQIARVVPLLEQGIEWRRDRLPTITVKATLPDGVEPTQVTMNLYNSMADLRAKLPAGY 852

Query: 845  KIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPV 904
            K+E+ G  E++A++ Q+I    PIM+ + L+++++Q++     ++V  T PLG+IG    
Sbjct: 853  KVEIQGGAEDAAESQQSIAAKAPIMLLVILVLLMIQLQHFGKAMLVLATGPLGIIGAAMA 912

Query: 905  LLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVL 964
            LL+ G PFG  A++G+IAL GI+MRN++IL+ QID +   G    +A+V A V+R RP++
Sbjct: 913  LLITGAPFGFVAILGVIALLGIIMRNSIILVDQIDQDIAAGHPRAEAIVGAAVRRFRPIM 972

Query: 965  LTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSR 1020
            LTAL A+LA IP++  +FWG +AY ++GG  V T++T++ LPA Y+++F   P ++
Sbjct: 973  LTALTAVLALIPISRGLFWGPMAYAMMGGILVATVLTILVLPAAYALFFGREPKAK 1028