Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 377 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  168 bits (426), Expect = 2e-46
 Identities = 121/344 (35%), Positives = 175/344 (50%), Gaps = 15/344 (4%)

Query: 17  LVACGDSSP--GKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQR 74
           L ACG++     ++PR   PV   V+   A++ A S +GVV A+ ++  GFR+SG+++ R
Sbjct: 31  LSACGEAQKPQAQEPR---PVRTVVATNRAASDAVSLTGVVEAQNEATYGFRISGRVIDR 87

Query: 75  LVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAVS 134
           LV+ G  V  GQ L R+DP D     R+ Q A+ AA A   QT +   R R L+A G   
Sbjct: 88  LVNVGDRVAPGQVLARLDPQDEQNALRSAQAALGAANANLTQTRNQYERQRQLLARGFTP 147

Query: 135 ASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAGQ 194
            + Y+Q + A   A+AQ+  A+A+  +A +   +  L AD+ GVV    AEPG+VV AGQ
Sbjct: 148 RAQYEQAEQAFLNARAQVDDAEARLQMAEDRLGFTELKADSAGVVTQRRAEPGEVVQAGQ 207

Query: 195 AVVRLARAGQREAVVYLPET-LRPAPG----STALATLFGKPAQAVPAKLRLLSDAADPI 249
            V+ +AR   R+AV  +P   L   PG    + ALAT    PA     ++R ++  ADP+
Sbjct: 208 PVIEVARQDGRDAVFDVPAAMLSGLPGDPEVTVALAT---DPAVTATGRVREVAPQADPV 264

Query: 250 TRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQP 309
           TRTF  R  LT P     LG T+   +   D      +IP  AL    +   VWV+  + 
Sbjct: 265 TRTFRVRVGLTNPPEGLRLGTTVVGRVM-VDRG-PVVEIPASALTRLNDKPAVWVVDPKT 322

Query: 310 AKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353
             V+ R +EVL        V   L   + +V  G   L  G +V
Sbjct: 323 QTVALRTIEVLRFGPASVSVGEGLKPSEIVVTAGVQALHPGQKV 366