Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 392 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  143 bits (361), Expect = 7e-39
 Identities = 119/365 (32%), Positives = 166/365 (45%), Gaps = 17/365 (4%)

Query: 4   RPAAIVGCLLPLA--LVACGDSSPGKD-PRDTPP----------VVKAVSVQDAS-ALAR 49
           RP A + C+L LA  L AC      K  P+D             VV+A++V  A  A + 
Sbjct: 22  RPTAALICILALAGLLAACDGQGTAKGAPKDASHPTSESARPALVVRAMAVTVADRATSV 81

Query: 50  SFSGVVVARTQSDLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTA 109
           S +G V A+  + L FRV G++ +RLVD G  V  G  L R+DP +      A   AV+A
Sbjct: 82  SLTGDVEAKVLTQLSFRVGGRVTERLVDVGAHVAAGDLLARVDPTEQQADLDAATAAVSA 141

Query: 110 ARARAKQTGDDEARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYA 169
           A +R +    +  R   L+A G  + ++YDQ    A AA++ L  A+AQ   AR+A  YA
Sbjct: 142 AESRLRVATSNLDRQSTLLAKGYTTRAAYDQATETAGAAESALETARAQLGTARDALGYA 201

Query: 170 VLLADADGVVMDTLAEPGQVVSAGQAVVRLARAGQREAVVYLPET-LRPAPGSTALATLF 228
            L A A G++     E GQVV   Q+V  LA  G R+AV  + ET  R +       +L 
Sbjct: 202 ELRARAAGIITARTFEVGQVVQPAQSVFTLAEDGTRDAVFDVYETFFRNSETDRIRISLV 261

Query: 229 GKPAQAVPAKLRLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQI 288
             P  A   ++R +S   D    T   +  +  P     LG+ +T  +    T      +
Sbjct: 262 SDPKVAADGRVREVSPVIDASNGTVRVKVAIDAPADVMALGSPVTGTVTWKAT--PRIVL 319

Query: 289 PIGALFDPGNGAGVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLR 348
           P GAL   G    VW I  +   VS   V V +      V+ S L  GD +V  GA  L 
Sbjct: 320 PWGALASDGGAPAVWRIDPKTRAVSLAKVAVEAFETGSIVISSGLAPGDLVVVDGAKRLS 379

Query: 349 DGVEV 353
            G  V
Sbjct: 380 TGQTV 384