Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 368 a.a., secretion protein HylD from Pseudomonas simiae WCS417

 Score =  259 bits (663), Expect = 6e-74
 Identities = 155/343 (45%), Positives = 203/343 (59%), Gaps = 6/343 (1%)

Query: 12  LLPLALV----ACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRV 67
           L PLAL+     C   +        P  V A  V+ A     +++GVV ART+SDLGFRV
Sbjct: 9   LTPLALLIILNGCNSKADTAAETPLPRPVLAAKVEAAGTQQSAYTGVVAARTESDLGFRV 68

Query: 68  SGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGL 127
           SGK+++R VD GQ V RG  L+ +D  D  L  R+ +  V AA+A+ +Q  DDE RY+ L
Sbjct: 69  SGKVIERKVDPGQHVSRGDTLLVLDIGDFELALRSAKNRVHAAQAQLRQRRDDENRYQRL 128

Query: 128 VADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPG 187
            + GAVS   +DQ       A+A+L++AQ+ A    N   Y+VL AD DG++ D   + G
Sbjct: 129 ASTGAVSRQIFDQSATLLRVAEAELASAQSDASQIENRRTYSVLKADGDGIITDVRVDRG 188

Query: 188 QVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSDAAD 247
           QVV+ GQ V RLA  G REA+V LPE  R      ALA  FG P QAV A LR LS +AD
Sbjct: 189 QVVAEGQIVARLAHDGAREAIVNLPENQRDQAAQKALAFPFGAPDQAVTATLRELSASAD 248

Query: 248 PITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAG 307
           P TRT+ ARYVL G +    LG+TIT+ +   +   +  ++PIGAL D G G GVW+I G
Sbjct: 249 PTTRTYRARYVLHGAVDRFALGSTITVRL-QGNGQAQQTRVPIGALLDSGQGTGVWLI-G 306

Query: 308 QPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDG 350
              KVS+  V+V S+  E A++ S +  G  IVALGAHLL  G
Sbjct: 307 ADDKVSFAPVKVASLGQEDALLDSGVSPGQVIVALGAHLLHSG 349