Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 380 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 24/361 (6%)

Query: 13  LPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALA--RSFSGVVVARTQSDLGFRVSGK 70
           L LAL ACGDS+   +  + P     V   +A  LA     SG + A   +++  RV+G 
Sbjct: 14  LTLALSACGDSAA--EAPEMPLAKVRVETLEAKPLAITSELSGRIAAPRIAEVRARVAGV 71

Query: 71  ILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVAD 130
           ++QR+   G  VK+G  L R+DP        + Q  ++ A A A +    E RY  LV  
Sbjct: 72  VMQRVFKEGHDVKQGDVLFRIDPAPFKADLDSAQANLSKAEADAFKARLQEQRYSQLVEG 131

Query: 131 GAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVV 190
            A+S   YD  +AA     A+++A +A  + AR    YA + A   G +   L   G +V
Sbjct: 132 NAISGQDYDNARAAVRQTNAEVAANKAAVERARLNLGYATVTAPISGRIGRALVTEGALV 191

Query: 191 SAGQAVVRLARAGQREAV----------------VYLPETLRPAPGSTALATLFGKPAQ- 233
              +A   LA   Q + +                 +   +L+      A ATL       
Sbjct: 192 GQNEA-TPLALIQQLDPIHADLTQSTRELNDLRRAFRAGSLKQVGQDQAKATLIEDDGSL 250

Query: 234 -AVPAKLRLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGA 292
             +P KL     + DP T     R     P      G+ + + + +   D +   +P  A
Sbjct: 251 YPLPGKLLFAEISVDPGTGQIILRSEFPNPDLDLLPGSFVRVRL-EQAVDKQGISVPQRA 309

Query: 293 LFDPGNGAGVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVE 352
           +     G  + ++      VS + VE+ +V +++ +V S L  GDRI+  G    R G +
Sbjct: 310 ITRDSAGIPMVLLLDAGQTVSQQPVELGAVINDRWIVSSGLKPGDRIIVEGLQHARPGEK 369

Query: 353 V 353
           V
Sbjct: 370 V 370