Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 356 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  138 bits (347), Expect = 3e-37
 Identities = 107/341 (31%), Positives = 161/341 (47%), Gaps = 6/341 (1%)

Query: 15  LALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQR 74
           L LVAC       +P   P +   V  +D   L R F+G + AR +S+LGFRV G+I +R
Sbjct: 12  LLLVACSKEDAPPEPV-RPVLSMEVKAEDQENLGR-FAGTIQARYESNLGFRVPGRIARR 69

Query: 75  LVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAVS 134
           +VD G  V++G  L  +DP D   Q R+ Q  +   +A+      +  R + L   G  +
Sbjct: 70  VVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELFNRGVGA 129

Query: 135 ASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAGQ 194
            +  D  +      +A L  A+A  + A +   YA L  D  G+V    AE GQVVSAGQ
Sbjct: 130 QAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQVVSAGQ 189

Query: 195 AVVRLARAGQREAVVYLPETL--RPAPGSTALATLFGKPAQAVPAKLRLLSDAADPITRT 252
            VV LAR   +EAV+ LP  L  R  P    L      P+    A +R +   A   TRT
Sbjct: 190 QVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQAQSATRT 249

Query: 253 FEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQPAKV 312
             AR  LT    +  LG  I++ +  +       ++P+ AL +      +W++      V
Sbjct: 250 RRARLTLTETPPAFRLGTAISVTL--STAIAPRIEVPLSALQEVDGKTRIWLLDTHSQTV 307

Query: 313 SWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353
             R + V+S   + A++   +  G+RIV  G + L+ G +V
Sbjct: 308 QTRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKV 348