Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 360 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  156 bits (394), Expect = 9e-43
 Identities = 121/360 (33%), Positives = 172/360 (47%), Gaps = 15/360 (4%)

Query: 8   IVGCLLPLALVACGDSSPGKDPRDTPPV-VKAVSVQDASALARSFSGVVVARTQSDLGFR 66
           I G  L   L  CG+     +P+    V V+ V   D +A A + +G + AR Q+DL FR
Sbjct: 9   IFGLGLLTLLSGCGEEKA--EPKQHSRVFVQTVQSADFAA-AVTLTGDIQARVQTDLSFR 65

Query: 67  VSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRG 126
           V GKI+QR+VD G  V   Q L ++DP DL     + Q  V A +AR KQT     R   
Sbjct: 66  VGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEK 125

Query: 127 LVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEP 186
           L+  G  S S YD  +AA  ++++ L+AAQAQ   AR    Y  L+ADA GV+    AE 
Sbjct: 126 LLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEV 185

Query: 187 GQVVSAGQAVVRLARAGQREAVVYLPETL--RPAPGSTALATLFGKPAQAVPAKLRLLSD 244
           GQVV A   +  LAR G+R+AV  + E+L   P P +    +L   P+     K+R ++ 
Sbjct: 186 GQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTP 245

Query: 245 AADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAK---QIPIGALFDPGNGAG 301
           A    T T + +  L        LG+ ++        +  AK   ++P  AL    +   
Sbjct: 246 AVAANTGTVQVKIALQALPKGMELGSVVS-----ATANGPAKASIELPWAALTKDLSEPA 300

Query: 302 VWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361
           VW+I G   K     V V      K ++   L  G+++V  G  LL  G+ V    Q AQ
Sbjct: 301 VWLIDGD-GKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVEIAQQGAQ 359