Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  163 bits (413), Expect = 7e-45
 Identities = 124/357 (34%), Positives = 177/357 (49%), Gaps = 12/357 (3%)

Query: 2   RLRPAAIVGCLLPLA-LVACGDSSPGKDPRDTPPVVKAVSVQDASALAR-SFSGVVVART 59
           R R AA +  LLP   LV C      +DP      VK V+V  +   A+  FS  V AR 
Sbjct: 10  RARSAAWL--LLPAVFLVGCSPKPAAQDP---VRAVKFVTVGASEFDAQPEFSAEVRARV 64

Query: 60  QSDLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGD 119
           +S LGFRV+GKI +R  + GQ V+ GQ L ++DP D  L A A +    AA         
Sbjct: 65  ESRLGFRVAGKITRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAA 124

Query: 120 DEARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVV 179
           D  RYR L     +S +  ++ +    AA+AQL  AQAQ     N   Y  L+AD  G++
Sbjct: 125 DLKRYRELREQNFISGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGII 184

Query: 180 MDTLAEPGQVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATLFG-KPAQAVPAK 238
               AEPGQVV AG  VVR+A+ G R+ V  +PE       + +  T+ G      +  +
Sbjct: 185 TAIEAEPGQVVQAGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGNELQGQ 244

Query: 239 LRLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAK--QIPIGALFDP 296
           +R ++ +AD +TRT+  +  +    A  PLGAT+    P       A   ++P  AL   
Sbjct: 245 VREVAASADAVTRTYSIKVAIDAATA-PPLGATVYAR-PQALAHAGATVLKLPTSALRQE 302

Query: 297 GNGAGVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353
           G G+ VWV+      V  +AV+V +    +AV+ S +  G  +VA G H+L  G +V
Sbjct: 303 GKGSAVWVLDKSTMTVRSQAVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKV 359