Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 357 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  174 bits (441), Expect = 3e-48
 Identities = 124/350 (35%), Positives = 179/350 (51%), Gaps = 15/350 (4%)

Query: 12  LLPLALV---ACGDSSPGKDPRDTPPVVKAVSVQDASALA---RSFSGVVVARTQSDLGF 65
           ++P+AL+   AC D    +D R      +AV+VQ   A A    S++G + +  +S +GF
Sbjct: 7   IVPIALLLLPACRDEPQVRDER------RAVAVQRIGADAGTSTSYAGEIRSAFESQIGF 60

Query: 66  RVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYR 125
            V+G+I++R VD G +V  GQ L+R+D  D      +     ++AR  A     D AR R
Sbjct: 61  EVAGRIVERRVDLGSSVHAGQTLLRLDNSDYARALDSAAAQSSSARTAAAVQQADLARSR 120

Query: 126 GLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAE 185
            L+  G +S + +DQ KAAA  A+AQL AA AQ+  A       VL A   GVV     E
Sbjct: 121 ELLKQGFISPAEFDQQKAAAIQAQAQLRAAGAQSGTASAQLSRTVLTAPRAGVVTQIQGE 180

Query: 186 PGQVVSAGQAVVRLARAGQREAVVYLPETL--RPAPGSTALATLFGKPAQAVPAKLRLLS 243
            GQVV AGQ +V LA   + E  V LPE    R    S    +++  P +   A+LR +S
Sbjct: 181 VGQVVGAGQTIVTLADPSRPEIAVALPEGSLDRIRSASRLSVSVWSSPGRRYAARLRSIS 240

Query: 244 DAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVW 303
            AADP TRTF AR  +  P  +  +G T  L +     D  A ++P+ A+      A  W
Sbjct: 241 GAADPATRTFAARLSVDAPAQALLMGETAELRVEGAAGD-AAVRVPLTAVLQSNGRAQAW 299

Query: 304 VIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353
           V+  +   V  RAV++ +   +   ++S L  G+ IV  G HLLR G +V
Sbjct: 300 VLDRRTMVVQPRAVQIGAAQGDMLTIRSGLKPGETIVTAGVHLLRAGEKV 349