Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 362 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score =  153 bits (386), Expect = 8e-42
 Identities = 120/359 (33%), Positives = 173/359 (48%), Gaps = 16/359 (4%)

Query: 3   LRPAAIVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALAR-SFSGVVVARTQS 61
           +RP ++V   L   L  C      ++  +T P V    VQ     AR + +G V AR Q+
Sbjct: 4   MRPLSVVCLGLLYMLTGCSK----EEVPETLPRVGVQQVQPTDFAARVTLTGDVQARVQT 59

Query: 62  DLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDE 121
           DL FRV GKI+ R VD G  VK  Q L R+DP DL     + +  V AA+AR  QT    
Sbjct: 60  DLSFRVGGKIISRSVDVGDHVKANQVLARLDPKDLQNNVDSAKAEVFAAQARVTQTSAAF 119

Query: 122 ARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMD 181
            R + L+  G  S S YD  +AA  + ++ L AAQAQ   A     Y  L+++A GV+ +
Sbjct: 120 VRQQKLLPKGYTSQSEYDAAEAALRSNQSALKAAQAQLANANEQLSYTALVSEAAGVITE 179

Query: 182 TLAEPGQVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTA--LATLFGKPAQAVPAKL 239
             AE GQVV A   +  LA  G R+AV  + E+L  AP S A  + +L   P       +
Sbjct: 180 RQAEVGQVVQATMPIFSLAVDGDRDAVFNVYESLLVAPPSDAGVVVSLLDDPKVQAHGFV 239

Query: 240 RLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAK---QIPIGALFDP 296
           R ++      + T + +  L        LGA +T       T+ + +   ++P  AL   
Sbjct: 240 REITPTVSAQSGTVQVKVGLKDVPPGMQLGAPVT-----ATTNAQGRPSIELPWSALTKA 294

Query: 297 GNGAGVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVME 355
            +   VWV+ G+  KV  R VE+      K VV S L  G+ +V  G  LL  G++V++
Sbjct: 295 LHEPAVWVV-GEGDKVELRKVEIRRYLTGKIVVASGLKGGETVVVNGGQLLHPGMQVLK 352